CB304890 | Citrus Genome Database

Overview


Name	CB304890
Unique Name	CB304890
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	622

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6283	contig	Csv1_Contig6283:676..1297.	BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins

Homology

[Close]

BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_SECCE (Photosystem II reaction center protein I OS=Secale cereale GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3

Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_SACOF (Photosystem II reaction center protein I OS=Saccharum officinarum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3

Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_SACHY (Photosystem II reaction center protein I OS=Saccharum hybrid GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3

Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_RANMC (Photosystem II reaction center protein I OS=Ranunculus macranthus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3

Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_POPTR (Photosystem II reaction center protein I OS=Populus trichocarpa GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3

Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_POPAL (Photosystem II reaction center protein I OS=Populus alba GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3

Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_PLAOC (Photosystem II reaction center protein I OS=Platanus occidentalis GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3

Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_PHAVU (Photosystem II reaction center protein I OS=Phaseolus vulgaris GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3

Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_PHAAO (Photosystem II reaction center protein I OS=Phalaenopsis aphrodite subsp. formosana GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3

Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_PELHO (Photosystem II reaction center protein I OS=Pelargonium hortorum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3

Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

The following BLAST results are available for this feature:

BLAST of CB304890 vs. ExPASy Swiss-Prot

BLAST of CB304890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109


Match Name	E-value	Identity	Description
PSBI_SECCE	1.868e-13	100.00	Photosystem II reaction center protein I OS=Secale...	[more]
PSBI_SACOF	1.868e-13	100.00	Photosystem II reaction center protein I OS=Saccha...	[more]
PSBI_SACHY	1.868e-13	100.00	Photosystem II reaction center protein I OS=Saccha...	[more]
PSBI_RANMC	1.868e-13	100.00	Photosystem II reaction center protein I OS=Ranunc...	[more]
PSBI_POPTR	1.868e-13	100.00	Photosystem II reaction center protein I OS=Populu...	[more]
PSBI_POPAL	1.868e-13	100.00	Photosystem II reaction center protein I OS=Populu...	[more]
PSBI_PLAOC	1.868e-13	100.00	Photosystem II reaction center protein I OS=Platan...	[more]
PSBI_PHAVU	1.868e-13	100.00	Photosystem II reaction center protein I OS=Phaseo...	[more]
PSBI_PHAAO	1.868e-13	100.00	Photosystem II reaction center protein I OS=Phalae...	[more]
PSBI_PELHO	1.868e-13	100.00	Photosystem II reaction center protein I OS=Pelarg...	[more]

Pages

Properties


Property Name	Value
Genbank description	FLAVEDO0002_IaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F04 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304890 ID=CB304890; Name=CB304890; organism=Citrus sinensis; type=EST; length=622bp
TTTTTTTTTTTTTTTTTTCGATTAGGAGAGATGGCTGAGTGGATTAAAGC
GTCGGATTGCTAATCCGGTGTACGAGTTCTTCGTACCGAGGGTTCGAATC
CCTCTCTTTCCGTTTCGGGCGATGGCTTGGTATTTTTCAAATTTAACTTT
AGCGAACACTTTTACTTTATTTTTAATAGTAACCGGGAATCAAAAAATCC
TAAGAACGTTTATACGAATAAAGTAAGCAACTCCTTCCTTTTTTATTCTT
CGCGTCCGGGATTACGCCCTGGATCATTAGACAGGAATCCGAAGATGAAG
AGCGAAACAAAGAATATCACTACGGTGTAAACAAAGAGTTTGAGAGTAAG
CATTACACAATCTCCAAATCAGGTTTTTGGGGAAAAGGAAAAAGAGAATA
GATTCTCTATTTTTATACTACATATCCAATTTTGACATCAAGAAATGAAG
TTCTTTTTAGAATTTGATTCTCTAAATAGAAAATCGTTTTCATAAATTAA
ATTCTCACAATTAGAATTCTACATTTTGGTTGGCTCTAATATAAGATGGT
TTCAGTGAAAAAGGGTCAAAATTGCAAATAGCAAATGGGGGATCAAAATG
GATCGCGGTTCCCCAAGAATTT