CB304890

Overview
NameCB304890
Unique NameCB304890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6283 contig Csv1_Contig6283:676..1297. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_STAPU (Photosystem II reaction center protein I OS=Staurastrum punctulatum GN=psbI PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.009e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = -3
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLF+FGFLSNDP RNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPTRNPGRKE 36          
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_ANTFO (Photosystem II reaction center protein I OS=Anthoceros formosae GN=psbI PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.009e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = -3
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLF+FGFLSNDP RNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPKRNPGRKE 36          
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_ADICA (Photosystem II reaction center protein I OS=Adiantum capillus-veneris GN=psbI PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.009e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = -3
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVY VVIFFVSLF+FGFLSNDPGRNPGR++
Sbjct:    1 MLTLKLFVYAVVIFFVSLFVFGFLSNDPGRNPGRKD 36          
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_WELMI (Photosystem II reaction center protein I OS=Welwitschia mirabilis GN=psbI PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.025e-11
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = -3
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLK+FVYTVV FF+SLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKVFVYTVVTFFISLFLFGFLSNDPGRNPGRKE 36          
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_OEDCA (Photosystem II reaction center protein I OS=Oedogonium cardiacum GN=psbI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = -3
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLK+FVYTVV FFVSLF+FGFLSNDPGRNPG+ E
Sbjct:    1 MLTLKIFVYTVVTFFVSLFVFGFLSNDPGRNPGKRE 36          
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_CHLVU (Photosystem II reaction center protein I OS=Chlorella vulgaris GN=psbI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = -3
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLK+FVYTVV FFVSLFIFGFLSNDPGRNPG+ E
Sbjct:    1 MLTLKIFVYTVVTFFVSLFIFGFLSNDPGRNPGQRE 36          
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_NEPOL (Photosystem II reaction center protein I OS=Nephroselmis olivacea GN=psbI PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.895e-11
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = -3
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLK+FVYTVV FFVSLFIFGFLSNDPGRNPG ++
Sbjct:    1 MLTLKIFVYTVVTFFVSLFIFGFLSNDPGRNPGTKD 36          
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_OLTVI (Photosystem II reaction center protein I OS=Oltmannsiellopsis viridis GN=psbI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = -3
Query:  255 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPG 353
            MLTLK+FVYTVV FFVSLFIFGFLSNDPGRNPG
Sbjct:    1 MLTLKIFVYTVVTFFVSLFIFGFLSNDPGRNPG 33          
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_CHLAT (Photosystem II reaction center protein I OS=Chlorokybus atmophyticus GN=psbI PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.677e-11
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = -3
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLK+FVYTVVIFFVSLFIFGFLSNDP RNP R++
Sbjct:    1 MLTLKIFVYTVVIFFVSLFIFGFLSNDPARNPKRKD 36          
The following BLAST results are available for this feature:
BLAST of CB304890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PSBI_STAPU6.009e-1291.67Photosystem II reaction center protein I OS=Staura... [more]
PSBI_ANTFO6.009e-1291.67Photosystem II reaction center protein I OS=Anthoc... [more]
PSBI_ADICA6.009e-1288.89Photosystem II reaction center protein I OS=Adiant... [more]
PSBI_WELMI1.025e-1186.11Photosystem II reaction center protein I OS=Welwit... [more]
PSBI_OEDCA1.339e-1186.11Photosystem II reaction center protein I OS=Oedogo... [more]
PSBI_CHLVU1.339e-1188.89Photosystem II reaction center protein I OS=Chlore... [more]
PSBI_NEPOL3.895e-1186.11Photosystem II reaction center protein I OS=Nephro... [more]
PSBI_OLTVI6.644e-1193.94Photosystem II reaction center protein I OS=Oltman... [more]
PSBI_CHLAT8.677e-1186.11Photosystem II reaction center protein I OS=Chloro... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304890 ID=CB304890; Name=CB304890; organism=Citrus sinensis; type=EST; length=622bp
TTTTTTTTTTTTTTTTTTCGATTAGGAGAGATGGCTGAGTGGATTAAAGC
GTCGGATTGCTAATCCGGTGTACGAGTTCTTCGTACCGAGGGTTCGAATC
CCTCTCTTTCCGTTTCGGGCGATGGCTTGGTATTTTTCAAATTTAACTTT
AGCGAACACTTTTACTTTATTTTTAATAGTAACCGGGAATCAAAAAATCC
TAAGAACGTTTATACGAATAAAGTAAGCAACTCCTTCCTTTTTTATTCTT
CGCGTCCGGGATTACGCCCTGGATCATTAGACAGGAATCCGAAGATGAAG
AGCGAAACAAAGAATATCACTACGGTGTAAACAAAGAGTTTGAGAGTAAG
CATTACACAATCTCCAAATCAGGTTTTTGGGGAAAAGGAAAAAGAGAATA
GATTCTCTATTTTTATACTACATATCCAATTTTGACATCAAGAAATGAAG
TTCTTTTTAGAATTTGATTCTCTAAATAGAAAATCGTTTTCATAAATTAA
ATTCTCACAATTAGAATTCTACATTTTGGTTGGCTCTAATATAAGATGGT
TTCAGTGAAAAAGGGTCAAAATTGCAAATAGCAAATGGGGGATCAAAATG
GATCGCGGTTCCCCAAGAATTT
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