CB304890 | Citrus Genome Database

Overview


Name	CB304890
Unique Name	CB304890
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	622

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6283	contig	Csv1_Contig6283:676..1297.	BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins

Homology

[Close]

BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_CARPA (Photosystem II reaction center protein I OS=Carica papaya GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3

Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_CAPBU (Photosystem II reaction center protein I OS=Capsella bursa-pastoris GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3

Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_CALFG (Photosystem II reaction center protein I OS=Calycanthus floridus var. glaucus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3

Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_BUXMI (Photosystem II reaction center protein I OS=Buxus microphylla GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3

Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_BRADI (Photosystem II reaction center protein I OS=Brachypodium distachyon GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3

Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_BARVE (Photosystem II reaction center protein I OS=Barbarea verna GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3

Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_ATRBE (Photosystem II reaction center protein I OS=Atropa belladonna GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3

Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_ARATH (Photosystem II reaction center protein I OS=Arabidopsis thaliana GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3

Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_ARAHI (Photosystem II reaction center protein I OS=Arabis hirsuta GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3

Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_AGRST (Photosystem II reaction center protein I OS=Agrostis stolonifera GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3

Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

The following BLAST results are available for this feature:

BLAST of CB304890 vs. ExPASy Swiss-Prot

BLAST of CB304890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109


Match Name	E-value	Identity	Description
PSBI_CARPA	1.868e-13	100.00	Photosystem II reaction center protein I OS=Carica...	[more]
PSBI_CAPBU	1.868e-13	100.00	Photosystem II reaction center protein I OS=Capsel...	[more]
PSBI_CALFG	1.868e-13	100.00	Photosystem II reaction center protein I OS=Calyca...	[more]
PSBI_BUXMI	1.868e-13	100.00	Photosystem II reaction center protein I OS=Buxus ...	[more]
PSBI_BRADI	1.868e-13	100.00	Photosystem II reaction center protein I OS=Brachy...	[more]
PSBI_BARVE	1.868e-13	100.00	Photosystem II reaction center protein I OS=Barbar...	[more]
PSBI_ATRBE	1.868e-13	100.00	Photosystem II reaction center protein I OS=Atropa...	[more]
PSBI_ARATH	1.868e-13	100.00	Photosystem II reaction center protein I OS=Arabid...	[more]
PSBI_ARAHI	1.868e-13	100.00	Photosystem II reaction center protein I OS=Arabis...	[more]
PSBI_AGRST	1.868e-13	100.00	Photosystem II reaction center protein I OS=Agrost...	[more]

Pages

Properties


Property Name	Value
Genbank description	FLAVEDO0002_IaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F04 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304890 ID=CB304890; Name=CB304890; organism=Citrus sinensis; type=EST; length=622bp
TTTTTTTTTTTTTTTTTTCGATTAGGAGAGATGGCTGAGTGGATTAAAGC
GTCGGATTGCTAATCCGGTGTACGAGTTCTTCGTACCGAGGGTTCGAATC
CCTCTCTTTCCGTTTCGGGCGATGGCTTGGTATTTTTCAAATTTAACTTT
AGCGAACACTTTTACTTTATTTTTAATAGTAACCGGGAATCAAAAAATCC
TAAGAACGTTTATACGAATAAAGTAAGCAACTCCTTCCTTTTTTATTCTT
CGCGTCCGGGATTACGCCCTGGATCATTAGACAGGAATCCGAAGATGAAG
AGCGAAACAAAGAATATCACTACGGTGTAAACAAAGAGTTTGAGAGTAAG
CATTACACAATCTCCAAATCAGGTTTTTGGGGAAAAGGAAAAAGAGAATA
GATTCTCTATTTTTATACTACATATCCAATTTTGACATCAAGAAATGAAG
TTCTTTTTAGAATTTGATTCTCTAAATAGAAAATCGTTTTCATAAATTAA
ATTCTCACAATTAGAATTCTACATTTTGGTTGGCTCTAATATAAGATGGT
TTCAGTGAAAAAGGGTCAAAATTGCAAATAGCAAATGGGGGATCAAAATG
GATCGCGGTTCCCCAAGAATTT