CB304890

Overview
NameCB304890
Unique NameCB304890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6283 contig Csv1_Contig6283:676..1297. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_AETGR (Photosystem II reaction center protein I OS=Aethionema grandiflora GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3 
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_AETCO (Photosystem II reaction center protein I OS=Aethionema cordifolium GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3 
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_ACOCL (Photosystem II reaction center protein I OS=Acorus calamus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3 
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_ACOAM (Photosystem II reaction center protein I OS=Acorus americanus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -3 
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36
[Close]
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_SILLA (Photosystem II reaction center protein I OS=Silene latifolia GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.162e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = -3 
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRE+
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRED 36
[Close]
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_PIPCE (Photosystem II reaction center protein I OS=Piper cenocladum GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.162e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = -3 
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRE+
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRED 36
[Close]
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSJ (Photosystem II reaction center protein I OS=Oryza sativa subsp. japonica GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.162e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = -3 
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36
[Close]
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSI (Photosystem II reaction center protein I OS=Oryza sativa subsp. indica GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.162e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = -3 
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36
[Close]
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSA (Photosystem II reaction center protein I OS=Oryza sativa GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.162e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = -3 
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36
[Close]
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_ORYNI (Photosystem II reaction center protein I OS=Oryza nivara GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.162e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = -3 
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36
The following BLAST results are available for this feature:
BLAST of CB304890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PSBI_AETGR1.868e-13100.00Photosystem II reaction center protein I OS=Aethio... [more]
PSBI_AETCO1.868e-13100.00Photosystem II reaction center protein I OS=Aethio... [more]
PSBI_ACOCL1.868e-13100.00Photosystem II reaction center protein I OS=Acorus... [more]
PSBI_ACOAM1.868e-13100.00Photosystem II reaction center protein I OS=Acorus... [more]
PSBI_SILLA4.162e-1397.22Photosystem II reaction center protein I OS=Silene... [more]
PSBI_PIPCE4.162e-1397.22Photosystem II reaction center protein I OS=Piper ... [more]
PSBI_ORYSJ4.162e-1397.22Photosystem II reaction center protein I OS=Oryza ... [more]
PSBI_ORYSI4.162e-1397.22Photosystem II reaction center protein I OS=Oryza ... [more]
PSBI_ORYSA4.162e-1397.22Photosystem II reaction center protein I OS=Oryza ... [more]
PSBI_ORYNI4.162e-1397.22Photosystem II reaction center protein I OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304890 ID=CB304890; Name=CB304890; organism=Citrus sinensis; type=EST; length=622bp
TTTTTTTTTTTTTTTTTTCGATTAGGAGAGATGGCTGAGTGGATTAAAGC
GTCGGATTGCTAATCCGGTGTACGAGTTCTTCGTACCGAGGGTTCGAATC
CCTCTCTTTCCGTTTCGGGCGATGGCTTGGTATTTTTCAAATTTAACTTT
AGCGAACACTTTTACTTTATTTTTAATAGTAACCGGGAATCAAAAAATCC
TAAGAACGTTTATACGAATAAAGTAAGCAACTCCTTCCTTTTTTATTCTT
CGCGTCCGGGATTACGCCCTGGATCATTAGACAGGAATCCGAAGATGAAG
AGCGAAACAAAGAATATCACTACGGTGTAAACAAAGAGTTTGAGAGTAAG
CATTACACAATCTCCAAATCAGGTTTTTGGGGAAAAGGAAAAAGAGAATA
GATTCTCTATTTTTATACTACATATCCAATTTTGACATCAAGAAATGAAG
TTCTTTTTAGAATTTGATTCTCTAAATAGAAAATCGTTTTCATAAATTAA
ATTCTCACAATTAGAATTCTACATTTTGGTTGGCTCTAATATAAGATGGT
TTCAGTGAAAAAGGGTCAAAATTGCAAATAGCAAATGGGGGATCAAAATG
GATCGCGGTTCCCCAAGAATTT
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