CB304890

Overview
NameCB304890
Unique NameCB304890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_AMBTC (Photosystem II reaction center protein I OS=Amborella trichopoda GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.162e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = -3
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36          
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_CRYJA (Photosystem II reaction center protein I OS=Cryptomeria japonica GN=psbI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.435e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = -3
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRKE 36          
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_PHYPA (Photosystem II reaction center protein I OS=Physcomitrella patens GN=psbI PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.099e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = -3
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_MARPO (Photosystem II reaction center protein I OS=Marchantia polymorpha GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.099e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = -3
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_HUPLU (Photosystem II reaction center protein I OS=Huperzia lucidula GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.099e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = -3
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_CHAVU (Photosystem II reaction center protein I OS=Chara vulgaris GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.099e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = -3
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFF+SLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFISLFIFGFLSNDPGRNPGRKE 36          
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_ANGEV (Photosystem II reaction center protein I OS=Angiopteris evecta GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.099e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = -3
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_LEPVR (Photosystem II reaction center protein I OS=Lepidium virginicum GN=psbI PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.211e-12
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = -3
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLF FGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFKFGFLSNDPGRNPGREE 36          
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_CYCTA (Photosystem II reaction center protein I OS=Cycas taitungensis GN=psbI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.581e-12
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = -3
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            M TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MFTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRKE 36          
BLAST of CB304890 vs. ExPASy Swiss-Prot
Match: PSBI_JASNU (Photosystem II reaction center protein I OS=Jasminum nudiflorum GN=psbI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.065e-12
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = -3
Query:  246 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 353
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPG+ E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGQRE 36          
The following BLAST results are available for this feature:
BLAST of CB304890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PSBI_AMBTC4.162e-1397.22Photosystem II reaction center protein I OS=Ambore... [more]
PSBI_CRYJA5.435e-1397.22Photosystem II reaction center protein I OS=Crypto... [more]
PSBI_PHYPA7.099e-1394.44Photosystem II reaction center protein I OS=Physco... [more]
PSBI_MARPO7.099e-1394.44Photosystem II reaction center protein I OS=Marcha... [more]
PSBI_HUPLU7.099e-1394.44Photosystem II reaction center protein I OS=Huperz... [more]
PSBI_CHAVU7.099e-1394.44Photosystem II reaction center protein I OS=Chara ... [more]
PSBI_ANGEV7.099e-1394.44Photosystem II reaction center protein I OS=Angiop... [more]
PSBI_LEPVR1.211e-1297.22Photosystem II reaction center protein I OS=Lepidi... [more]
PSBI_CYCTA1.581e-1294.44Photosystem II reaction center protein I OS=Cycas ... [more]
PSBI_JASNU2.065e-1294.44Photosystem II reaction center protein I OS=Jasmin... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304890 ID=CB304890; Name=CB304890; organism=Citrus sinensis; type=EST; length=622bp
TTTTTTTTTTTTTTTTTTCGATTAGGAGAGATGGCTGAGTGGATTAAAGC
GTCGGATTGCTAATCCGGTGTACGAGTTCTTCGTACCGAGGGTTCGAATC
CCTCTCTTTCCGTTTCGGGCGATGGCTTGGTATTTTTCAAATTTAACTTT
AGCGAACACTTTTACTTTATTTTTAATAGTAACCGGGAATCAAAAAATCC
TAAGAACGTTTATACGAATAAAGTAAGCAACTCCTTCCTTTTTTATTCTT
CGCGTCCGGGATTACGCCCTGGATCATTAGACAGGAATCCGAAGATGAAG
AGCGAAACAAAGAATATCACTACGGTGTAAACAAAGAGTTTGAGAGTAAG
CATTACACAATCTCCAAATCAGGTTTTTGGGGAAAAGGAAAAAGAGAATA
GATTCTCTATTTTTATACTACATATCCAATTTTGACATCAAGAAATGAAG
TTCTTTTTAGAATTTGATTCTCTAAATAGAAAATCGTTTTCATAAATTAA
ATTCTCACAATTAGAATTCTACATTTTGGTTGGCTCTAATATAAGATGGT
TTCAGTGAAAAAGGGTCAAAATTGCAAATAGCAAATGGGGGATCAAAATG
GATCGCGGTTCCCCAAGAATTT
back to top