CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_PINTH (50S ribosomal protein L14, chloroplastic OS=Pinus thunbergii GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 34/106 (32.08%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ +  I V G   R      A +GD+++A +K+  P++   + +V+ AV++R  K + R +G+ +  +DNA V+++ +G  KG+ + GP+ +E   L
Sbjct:    8 LNIADNSGARKIMCIRVLGASNR----KCAHIGDVIIAIIKEAVPNMPLEKSEVVRAVVIRTCKEFERDNGMMIRSDDNAAVVIDQEGNPKGTRVFGPVAQELRQL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_PINKO (50S ribosomal protein L14, chloroplastic OS=Pinus koraiensis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 34/106 (32.08%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ +  I V G   R      A +GD+++A +K+  P++   + +V+ AV++R  K + R +G+ +  +DNA V+++ +G  KG+ + GP+ +E   L
Sbjct:    8 LNIADNSGARKIMCIRVLGASNR----KCAHIGDVIIAIIKEAVPNMPLEKSEVVRAVVIRTCKEFERDNGMMIRSDDNAAVVIDQEGNPKGTRVFGPVAQELRQL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_MANES (50S ribosomal protein L14, chloroplastic OS=Manihot esculenta GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ I G I +E   L
Sbjct:    8 LNVADNSGARELMCIRIIGTSNRRY----AHIGDVIVAVIKEAAPNSPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_LIRTU (50S ribosomal protein L14, chloroplastic OS=Liriodendron tulipifera GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 37/106 (34.91%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G          A +GD+++A +K+  P++   R +V+ AVIVR  K  RR +G+ + ++DNA V+++ +G  KG+ + G I +E   L
Sbjct:    8 LNVADNSGARELMCIRIIGASNHRY----AHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_BUXMI (50S ribosomal protein L14, chloroplastic OS=Buxus microphylla GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 37/106 (34.91%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR  K   R +G+ + ++DNA V+++ +G  KG+ + G I +E   L
Sbjct:    8 LNVADNSGARKLMCIRIVGASNRRY----AHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELNRGNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_ANEMR (50S ribosomal protein L14, plastid OS=Aneura mirabilis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = -3
Query:  245 NCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 538
            N ADN+GA+ L  I V G   R      A +GD+++A VK+  P++   + +++ AVI R RK   R DG  + F+DNA V +N +   +G+ + GPI +E
Sbjct:    9 NVADNSGAQKLMCIRVTGTNDR----EYAGIGDVIVAVVKEAVPNMPTKKSEIVRAVIARTRKEIGRTDGSVIKFDDNAAVTINRENNPRGTRVFGPIARE 105          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RK14_PINTH8.585e-1132.0850S ribosomal protein L14, chloroplastic OS=Pinus ... [more]
RK14_PINKO8.585e-1132.0850S ribosomal protein L14, chloroplastic OS=Pinus ... [more]
RK14_MANES8.585e-1135.8550S ribosomal protein L14, chloroplastic OS=Maniho... [more]
RK14_LIRTU8.585e-1134.9150S ribosomal protein L14, chloroplastic OS=Liriod... [more]
RK14_BUXMI8.585e-1134.9150S ribosomal protein L14, chloroplastic OS=Buxus ... [more]
RK14_ANEMR8.585e-1137.6250S ribosomal protein L14, plastid OS=Aneura mirab... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
back to top