CB304909

Overview
NameCB304909
Unique NameCB304909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9203 contig Csv1_Contig9203:447..1060. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: TVP23_LACBS (Golgi apparatus membrane protein TVP23 OS=Laccaria bicolor (strain S238N-H82) GN=TVP23 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.388e-13
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = -2
Query:  338 VGLRWWNEINDMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCQKDAKKQ 613
            VGLR+WN++++ GES W FE  D    A  N  DS +FW  LY+  + W VL I SL++    ++ +V + L  +I N+IGFT   +DAK++
Sbjct:  142 VGLRFWNQVDEDGESYWVFESRDPSRPA--NPIDSKMFWIALYVFPLLWSVLLIVSLLKLGFAFIPIVVLALVFNITNVIGFTYADRDAKQK 231          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: TVP23_ASPTN (Golgi apparatus membrane protein tvp23 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tvp23 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.021e-12
Identity = 38/110 (34.55%), Postives = 60/110 (54.55%), Query Frame = -2
Query:  287 VGLRWWNEINDM-GESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCQKDAKKQIQQFASQTIASRFTSTL 613
            VGLRWWNE+N   G+S W FE  D  +   +   D   FW +LY++   WI L I ++I+    +L +V + L L+I N + F++C  D   Q   FA++ ++    S +
Sbjct:   75 VGLRWWNEVNTTTGDSHWVFESSDPNTRT-ITATDKRFFWLSLYVTPAFWIGLAILAVIQLSVIWLSLVVIALVLTITNTVAFSRC--DRFSQASTFANRALSGGIVSNI 181          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: TVP23_ASPNC (Golgi apparatus membrane protein tvp23 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tvp23 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.021e-12
Identity = 40/111 (36.04%), Postives = 60/111 (54.05%), Query Frame = -2
Query:  287 VGLRWWNEIN-DMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQA-DYLLVVGVCLTLSIANIIGFTKCQKDAKKQIQQFASQTIASRFTSTL 613
            VGLRWWNE+N   G+S W FE  D  +   +   D   FW +LY++   WI L I ++IR  +  +L +V + L L+I N + F++C  D   Q   FA+  ++    S L
Sbjct:   75 VGLRWWNEVNTSSGDSTWVFESSDPTTRT-ITATDKRFFWLSLYVTPALWIGLAILAIIRLSSVIWLSLVAIALALTITNTVAFSRC--DRFSQASTFANSALSGGVMSNL 182          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: TVP23_COPC7 (Golgi apparatus membrane protein TVP23 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TVP23 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.640e-12
Identity = 35/92 (38.04%), Postives = 56/92 (60.87%), Query Frame = -2
Query:  338 VGLRWWNEINDMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCQKDAKKQ 613
            VGLR+WN++++ GES W FE  D    A  N  DS +FW  LY+  + W  L I S+++    ++ +V + L  +I N++GFT   +DAK++
Sbjct:   76 VGLRFWNQVDEDGESYWVFESRDPSRPA--NPIDSKMFWIALYVFPLLWGALLIVSILKLGFAFIPIVVLALVFNITNVVGFTYADRDAKQK 165          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: TVP23_CANAL (Golgi apparatus membrane protein TVP23 OS=Candida albicans GN=TVP23 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.448e-12
Identity = 43/111 (38.74%), Postives = 56/111 (50.45%), Query Frame = -2
Query:  344 VGLRWWNEIN---------------DMGES------VWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCQKDAK 613
            VGLRWWNE                  +GES      VW FE  D      +N  DS +FW  LY   VAW+VLG+ ++++ Q  YLL + V  +LS+ N + FTKC K  K
Sbjct:  134 VGLRWWNETTLIESENGNGNGNASGQVGESAKDFENVWVFETADPNRY--INPIDSKVFWLLLYGQPVAWVVLGVLAVLKLQFLYLLFIIVATSLSMTNAMAFTKCDKFGK 242          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: TVP23_BOTFB (Golgi apparatus membrane protein tvp23 OS=Botryotinia fuckeliana (strain B05.10) GN=tvp23 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.681e-12
Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = -2
Query:  353 VGLRWWNEINDM-GESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCQK 613
            VGLRWWNE++   G+S W FE  D  +   +N  DS  FW  LY   + W+ L   ++ RF+  +L ++ + L+L++ N + F++C K
Sbjct:   67 VGLRWWNEVDPASGDSHWVFESSDPNTKI-INPTDSRFFWLALYSQPLLWVGLAFVAIFRFEFIWLTLIVIALSLTVTNTLAFSRCDK 153          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: TVP23_NEOFI (Golgi apparatus membrane protein tvp23 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tvp23 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.003e-11
Identity = 37/111 (33.33%), Postives = 60/111 (54.05%), Query Frame = -2
Query:  287 VGLRWWNEIND-MGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQA-DYLLVVGVCLTLSIANIIGFTKCQKDAKKQIQQFASQTIASRFTSTL 613
            VGLRWWNE+N   G+S W FE  D  +   ++  D   FW +LY++   WI L + +++R  +  +L +V + L L+I N + F++C  D   Q   +AS+       + L
Sbjct:   74 VGLRWWNEVNTATGDSHWVFESSD-PATRTISATDKRFFWLSLYVTPALWIGLAVLAIVRLSSVIWLSLVAIALVLTITNTVAFSRC--DRFSQASTYASRAFGGNIVNNL 181          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: TVP23_MAGGR (Golgi apparatus membrane protein TVP23 OS=Magnaporthe grisea GN=TVP23 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.003e-11
Identity = 33/88 (37.50%), Postives = 52/88 (59.09%), Query Frame = -2
Query:  353 VGLRWWNEINDM-GESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCQK 613
            VGLRWWNE++   G+S W FE  +  +   +N  DS  FW  +Y   + WI L + +L+R +  +L +V + L L+I N + F++C K
Sbjct:   62 VGLRWWNEVDPQSGDSHWVFESSEPGTKT-VNPTDSRFFWLAIYAQPLLWIGLAVLALVRLKFIWLPLVAIALVLTITNSLAFSRCDK 148          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: TVP23_NEUCR (Golgi apparatus membrane protein tvp-23 OS=Neurospora crassa GN=tvp-23 PE=3 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.310e-11
Identity = 38/113 (33.63%), Postives = 61/113 (53.98%), Query Frame = -2
Query:  287 VGLRWWNEIN-DMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCQKDAKKQI---QQFASQTIASRFTSTL 613
            VGLRWWNE++ + G+S W FE  +  +   +N  DS  FW  +Y   + W+VL I +L   +  +L +V + L L+I N + F++C K ++        F+S  IA    S +
Sbjct:   72 VGLRWWNEVDPNSGDSHWVFESSEPGTKI-INATDSRFFWLAIYAQPLLWVVLAIVALFSLKFIWLPLVAIALVLTITNSLAFSRCDKFSQASNIAGTAFSSGNIAGNIASNM 183          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: TVP23_ASPOR (Golgi apparatus membrane protein tvp23 OS=Aspergillus oryzae GN=tvp23 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.310e-11
Identity = 38/111 (34.23%), Postives = 61/111 (54.95%), Query Frame = -2
Query:  287 VGLRWWNEIN-DMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQA-DYLLVVGVCLTLSIANIIGFTKCQKDAKKQIQQFASQTIASRFTSTL 613
            VGLRWWNE+N   G+S W FE  D  +  R+   D   FW +LY++   W+ L I ++IR  +  +L +V + L L+I N + F++C  D   Q   FA++ +     + +
Sbjct:   77 VGLRWWNEVNVASGDSHWVFESSD-PTTRRIAATDKRFFWLSLYVTPALWVGLAILAIIRLSSVIWLSLVAIALILTITNTLAFSRC--DRFSQASTFANRALTGGIVNNI 184          
The following BLAST results are available for this feature:
BLAST of CB304909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
TVP23_LACBS2.388e-1341.30Golgi apparatus membrane protein TVP23 OS=Laccaria... [more]
TVP23_ASPTN2.021e-1234.55Golgi apparatus membrane protein tvp23 OS=Aspergil... [more]
TVP23_ASPNC2.021e-1236.04Golgi apparatus membrane protein tvp23 OS=Aspergil... [more]
TVP23_COPC72.640e-1238.04Golgi apparatus membrane protein TVP23 OS=Coprinop... [more]
TVP23_CANAL3.448e-1238.74Golgi apparatus membrane protein TVP23 OS=Candida ... [more]
TVP23_BOTFB7.681e-1236.36Golgi apparatus membrane protein tvp23 OS=Botryoti... [more]
TVP23_NEOFI1.003e-1133.33Golgi apparatus membrane protein tvp23 OS=Neosarto... [more]
TVP23_MAGGR1.003e-1137.50Golgi apparatus membrane protein TVP23 OS=Magnapor... [more]
TVP23_NEUCR1.310e-1133.63Golgi apparatus membrane protein tvp-23 OS=Neurosp... [more]
TVP23_ASPOR1.310e-1134.23Golgi apparatus membrane protein tvp23 OS=Aspergil... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_H07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_H07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304909 ID=CB304909; Name=CB304909; organism=Citrus sinensis; type=EST; length=614bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATGCCAAAAAAACTTATTG
TTCTATAAATGAATTTTTTCTGTAATTTCATTATACGAATACCAGTAACT
CCAGAAGGTTATACAAATACATCTACTAATTTGTTTTCCCATAGAGTTCA
AAAATAAGCCGATCCATACAGGCAAGTTTGTACAAGGCCACCACTCCTTT
CTCAACATATCTTCCACGAGCAAGTTTACTGGTCCACCTTACACCCAGCT
TCTCTAACTGAATCAGACAACACTGAAAGCTGACTGTAGGGTAGATGTGA
ATCGGGATGCGATGGTCTGGGAGGCAAATTGTTGGATCTGCTTCTTAGCA
TCTTTTTGGCATTTGGTAAAACCAATAATGTTTGCGATGCTGAGGGTCAA
ACAGACACCAACAACCAGGAGATAATCAGCTTGGAACCTAATGAGAGAAA
ATATCCCAAGCACAATCCAAGCAACAGCCGAAAGGTAAAGGGTCCACCAG
AATAGCCAGGAATCTTTCTTGTTCATGCGAGCCATGGACTCATGGTCAAG
GCACTCAAACTTCCACACACTCTCACCCATATCATTTATTTCATTCCACC
ACCTCAAACCAACT
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