CB304909

Overview
NameCB304909
Unique NameCB304909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9203 contig Csv1_Contig9203:447..1060. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: FA18B_PONAB (Protein FAM18B OS=Pongo abelii GN=FAM18B PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.711e-11
Identity = 33/107 (30.84%), Postives = 57/107 (53.27%), Query Frame = -2
Query:  299 VGLRWWNEINDMGESVWKFECLDHESMAR--MNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCQKDAKKQIQQFASQTIASRF 613
            VGLRWWN I++ G+S W FE     S     +++ +S +FW  L    V W++    +L  F+  +L VV + + L  AN+ G+ +C+  ++K +   A+     +F
Sbjct:   88 VGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRKNLTSMATSYFGKQF 194          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: FA18B_MOUSE (Protein FAM18B OS=Mus musculus GN=Fam18b PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.711e-11
Identity = 36/109 (33.03%), Postives = 59/109 (54.13%), Query Frame = -2
Query:  299 VGLRWWNEINDMGESVWKFECLDHESMARMNKK----DSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCQKDAKKQIQQFASQTIASRF 613
            VGLRWWN I++ G+S W FE    +S  + NK     +S +FW  L    V W++    +L  F+  +L VV + + L  AN+ G+ +C+  +KK +   A+  +  +F
Sbjct:   88 VGLRWWNHIDEDGKSHWVFE--SRKSTPQDNKTISEAESRIFWLGLIACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSKKNLTSMATSYLGKQF 194          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: TVP23_PODAN (Golgi apparatus membrane protein TVP23 OS=Podospora anserina GN=TVP23 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.235e-11
Identity = 33/88 (37.50%), Postives = 51/88 (57.95%), Query Frame = -2
Query:  353 VGLRWWNEIN-DMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCQK 613
            VGLRWWNE++   G+S W FE  +  S   +N  DS  FW  +Y   + WI L + ++  F+  +L +V + L L+I N + F++C K
Sbjct:   73 VGLRWWNEVDPSTGDSHWVFESSEPGSKV-INATDSRFFWIAIYAQPLFWIALAVVAVFSFKFIWLPLVAIALVLTITNSLAFSRCDK 159          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: TVP23_ASPFU (Golgi apparatus membrane protein tvp23 OS=Aspergillus fumigatus GN=tvp23 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.235e-11
Identity = 36/111 (32.43%), Postives = 60/111 (54.05%), Query Frame = -2
Query:  287 VGLRWWNEIND-MGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQA-DYLLVVGVCLTLSIANIIGFTKCQKDAKKQIQQFASQTIASRFTSTL 613
            VGLRWWNE+N   G+S W FE  D  +   ++  D   FW +LY++   WI L + +++R  +  +L +V + L L+I N + F++C  D   Q   +A++       + L
Sbjct:   74 VGLRWWNEVNTATGDSHWVFESSD-PATRTISATDKRFFWLSLYVTPALWIGLAVLAIVRLSSVIWLSLVAIALVLTITNTVAFSRC--DRFSQASTYANRAFGGNIVNNL 181          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: TVP23_ASPFC (Golgi apparatus membrane protein tvp23 OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=tvp23 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.235e-11
Identity = 36/111 (32.43%), Postives = 60/111 (54.05%), Query Frame = -2
Query:  287 VGLRWWNEIND-MGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQA-DYLLVVGVCLTLSIANIIGFTKCQKDAKKQIQQFASQTIASRFTSTL 613
            VGLRWWNE+N   G+S W FE  D  +   ++  D   FW +LY++   WI L + +++R  +  +L +V + L L+I N + F++C  D   Q   +A++       + L
Sbjct:   74 VGLRWWNEVNTATGDSHWVFESSD-PATRTISATDKRFFWLSLYVTPALWIGLAVLAIVRLSSVIWLSLVAIALVLTITNTVAFSRC--DRFSQASTYANRAFGGNIVNNL 181          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: FA18B_HUMAN (Protein FAM18B OS=Homo sapiens GN=FAM18B PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.235e-11
Identity = 33/107 (30.84%), Postives = 57/107 (53.27%), Query Frame = -2
Query:  299 VGLRWWNEINDMGESVWKFECLDHESMAR--MNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCQKDAKKQIQQFASQTIASRF 613
            VGLRWWN I++ G+S W FE     S     +++ +S +FW  L    V W++    +L  F+  +L VV + + L  AN+ G+ +C+  ++K +   A+     +F
Sbjct:   88 VGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVRSRKHLTSMATSYFGKQF 194          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: TVP23_VANPO (Golgi apparatus membrane protein TVP23 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TVP23 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 34/88 (38.64%), Postives = 47/88 (53.41%), Query Frame = -2
Query:  353 VGLRWWNEINDMGESVWKFECLDHESMA-RMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCQK 613
            V LRWW +      S + FE     S    +N  DS LFWW++YL+ + WIV GI  ++R +  Y L+V V + L+  N  GF  C K
Sbjct:   70 VQLRWWYDTTGKQSSSFTFESYKQFSPGPSINPIDSKLFWWSIYLTPIVWIVFGIMCILRLKLFYFLLVSVGICLTGINAYGFRSCDK 157          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: FA18B_BOVIN (Protein FAM18B OS=Bos taurus GN=FAM18B PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 33/107 (30.84%), Postives = 58/107 (54.21%), Query Frame = -2
Query:  299 VGLRWWNEINDMGESVWKFEC--LDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCQKDAKKQIQQFASQTIASRF 613
            VGLRWWN I++ G+S W FE      +    +++ +S +FW  L    V W+V    +L  F+  +L VV + + L  AN+ G+ +C+  ++K +   A+  +  +F
Sbjct:   88 VGLRWWNHIDEDGKSHWVFESRKASPQEGKTVSEAESRIFWLGLVACPVLWVVFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRKNLTSMATTYLGRQF 194          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: FA18B_DICDI (Uncharacterized FAM18-like protein 2 OS=Dictyostelium discoideum GN=DDB_G0286703 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 40/115 (34.78%), Postives = 63/115 (54.78%), Query Frame = -2
Query:  278 VGLRWWNEINDM-GESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCQKDAKKQIQQFASQTIASRF--TSTLQSA 613
            VGLRWWN+++   G + W FE        R+N+ +S +FW TLY + + WI+  +  +I  Q  ++L+  + L+L++AN+ GF KC           A+ T AS +   S LQ A
Sbjct:  149 VGLRWWNQVDPKDGSNKWYFETAPEGH--RVNQIESLIFWITLYGTPIFWILFFLKCIISLQFAWILIPIIALSLNMANVYGFYKCSNSNVSN----AAATFASNYIGRSLLQRA 257          
The following BLAST results are available for this feature:
BLAST of CB304909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
FA18B_PONAB1.711e-1130.84Protein FAM18B OS=Pongo abelii GN=FAM18B PE=2 SV=1[more]
FA18B_MOUSE1.711e-1133.03Protein FAM18B OS=Mus musculus GN=Fam18b PE=1 SV=1[more]
TVP23_PODAN2.235e-1137.50Golgi apparatus membrane protein TVP23 OS=Podospor... [more]
TVP23_ASPFU2.235e-1132.43Golgi apparatus membrane protein tvp23 OS=Aspergil... [more]
TVP23_ASPFC2.235e-1132.43Golgi apparatus membrane protein tvp23 OS=Aspergil... [more]
FA18B_HUMAN2.235e-1130.84Protein FAM18B OS=Homo sapiens GN=FAM18B PE=2 SV=1[more]
TVP23_VANPO4.979e-1138.64Golgi apparatus membrane protein TVP23 OS=Vanderwa... [more]
FA18B_BOVIN6.503e-1130.84Protein FAM18B OS=Bos taurus GN=FAM18B PE=2 SV=1[more]
FA18B_DICDI8.493e-1134.78Uncharacterized FAM18-like protein 2 OS=Dictyostel... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_H07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_H07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304909 ID=CB304909; Name=CB304909; organism=Citrus sinensis; type=EST; length=614bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATGCCAAAAAAACTTATTG
TTCTATAAATGAATTTTTTCTGTAATTTCATTATACGAATACCAGTAACT
CCAGAAGGTTATACAAATACATCTACTAATTTGTTTTCCCATAGAGTTCA
AAAATAAGCCGATCCATACAGGCAAGTTTGTACAAGGCCACCACTCCTTT
CTCAACATATCTTCCACGAGCAAGTTTACTGGTCCACCTTACACCCAGCT
TCTCTAACTGAATCAGACAACACTGAAAGCTGACTGTAGGGTAGATGTGA
ATCGGGATGCGATGGTCTGGGAGGCAAATTGTTGGATCTGCTTCTTAGCA
TCTTTTTGGCATTTGGTAAAACCAATAATGTTTGCGATGCTGAGGGTCAA
ACAGACACCAACAACCAGGAGATAATCAGCTTGGAACCTAATGAGAGAAA
ATATCCCAAGCACAATCCAAGCAACAGCCGAAAGGTAAAGGGTCCACCAG
AATAGCCAGGAATCTTTCTTGTTCATGCGAGCCATGGACTCATGGTCAAG
GCACTCAAACTTCCACACACTCTCACCCATATCATTTATTTCATTCCACC
ACCTCAAACCAACT
back to top