CB304913

Overview
NameCB304913
Unique NameCB304913
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13203 contig Csv1_Contig13203:1..591. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CP3AJ_CAPAE (Cytochrome P450 3A19 (Fragment) OS=Capra aegagrus GN=CYP3A19 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13
Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = -2
Query:  331 ETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSF 594
            + ++  +++P G  + +P+ ++H +PE W +   EF+PERF++  +K   N   Y PF  GPR CVG  FAL+  K+A   ILQN+SF
Sbjct:   91 DVEIHGVSIPKGTTVMVPLFVLHNNPEFWPEPE-EFRPERFSKK-NKDGINPYVYLPFGTGPRNCVGMRFALMNIKLALVRILQNFSF 176          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CP131_DROME (Probable cytochrome P450 313a1 OS=Drosophila melanogaster GN=Cyp313a1 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.868e-13
Identity = 38/96 (39.58%), Postives = 57/96 (59.38%), Query Frame = -2
Query:  313 ETKLGN-LTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERF-AEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELSPSY 594
            + +L N + +P GV IG+ M   H++PE+WG DA  F P+ F AE + +  K+  +Y PFA G R C+G  +A++ +K A   IL+NY    S  Y
Sbjct:  374 DVRLSNGVLIPKGVVIGIDMFHTHRNPEVWGPDADNFNPDNFLAENMEQ--KHPYAYIPFARGKRNCIGSKYAMMSSKFALCRILRNYKISTSTLY 467          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CP4AP_PIG (Cytochrome P450 4A25 OS=Sus scrofa GN=CYP4A25 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.051e-13
Identity = 43/112 (38.39%), Postives = 66/112 (58.93%), Query Frame = -2
Query:  244 TLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELSPSYVHAPTAVP--TLHPELGTQLILRKL 573
            +LPAG+ + L +  +H +P++W +   EF P RFA G   +A++  ++ PF+ G R C+G+ FA+ E K+A  + L    FEL+P     PT +P   LH + G  L LRKL
Sbjct:  398 SLPAGIILSLSVYSLHHNPQVWPNPE-EFDPSRFAPG---SARHSHAFMPFSGGSRNCIGKQFAMNEMKVAVALTL--LRFELAPDPSRKPTVIPEVVLHSKNGIHLKLRKL 503          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: C13A6_CAEEL (Putative cytochrome P450 CYP13A6 OS=Caenorhabditis elegans GN=cyp-13A6 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.616e-13
Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = -2
Query:  331 ETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSF 594
            ET +  +    G+ I +    +H +P +WG+D  +FKPER+  G  +  ++  SY PF  GPR C+G   A +E K+    IL+ YSF
Sbjct:  399 ETTINGVNFDEGMNIQVDTWTLHHNPRIWGEDVEDFKPERWENGACEHLEHNGSYIPFGSGPRQCIGMRLAQMEQKILLAQILKEYSF 486          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: C13A3_CAEEL (Putative cytochrome P450 CYP13A3 OS=Caenorhabditis elegans GN=cyp-13A3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 37/88 (42.05%), Postives = 50/88 (56.82%), Query Frame = -2
Query:  328 TKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 591
            T LG + +  G  +      +H DP+ WG++A EFKPER+  G  +A     +Y PF LGPRIC+G   A +E KM    IL+ YS E
Sbjct:  403 TVLG-MKIEEGTNVQADTWTLHYDPKFWGENANEFKPERWESGDEQAVAKG-AYLPFGLGPRICIGMRLAYMEEKMLLAQILKKYSLE 488          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CP3AB_MOUSE (Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.507e-12
Identity = 34/89 (38.20%), Postives = 55/89 (61.80%), Query Frame = -2
Query:  328 ETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 594
            + +L  + +P G  + +P   +H DP+ W +   EF+PERF++  +K + +   Y PF  GPR C+G  FAL+  K+A T I+QN+SF+
Sbjct:  381 DVELNGVYIPKGSTVMIPSYALHHDPQHWSEPE-EFQPERFSKE-NKGSIDPYVYLPFGNGPRNCLGMRFALMNMKLALTKIMQNFSFQ 467          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CP3A1_RAT (Cytochrome P450 3A1 OS=Rattus norvegicus GN=Cyp3a1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.507e-12
Identity = 33/89 (37.08%), Postives = 56/89 (62.92%), Query Frame = -2
Query:  328 ETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 594
            + ++  + +P G  + +P   +H+DP+ W +   EF+PERF++  +K + +   Y PF  GPR C+G  FAL+  K+A T +LQN+SF+
Sbjct:  381 DVEINGVFMPKGSVVMIPSYALHRDPQHWPEPE-EFRPERFSKE-NKGSIDPYVYLPFGNGPRNCIGMRFALMNMKLALTKVLQNFSFQ 467          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CP341_MOUSE (Cytochrome P450 3A41 OS=Mus musculus GN=Cyp3a41a PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.274e-12
Identity = 32/89 (35.96%), Postives = 55/89 (61.80%), Query Frame = -2
Query:  328 ETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 594
            + +L  + +P G  + +P   +H DP+ W +   EF+PERF++  +K + +   Y PF +GPR C+G  FA +  K+A T ++QN+SF+
Sbjct:  381 DVELNGVYIPKGSTVMIPSYALHHDPQHWPEPE-EFQPERFSKE-NKGSIDPYLYMPFGIGPRNCIGMRFAFMTMKLALTKVMQNFSFQ 467          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CP3AC_CANFA (Cytochrome P450 3A12 OS=Canis familiaris GN=CYP3A12 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.276e-12
Identity = 32/89 (35.96%), Postives = 54/89 (60.67%), Query Frame = -2
Query:  328 ETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 594
            + ++  + +P G  + +P   +H+D  LW +   EF+PERF+   +K + N  +Y PF  GPR C+G  FA++  K+A   +LQN+SF+
Sbjct:  380 DVEISGVFIPKGTVVMVPTFTLHRDQSLWPEPE-EFRPERFSRK-NKDSINPYTYLPFGTGPRNCIGMRFAIMNMKLALVRVLQNFSFK 466          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CP3AR_ONCMY (Cytochrome P450 3A27 OS=Oncorhynchus mykiss GN=cyp3a27 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.585e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = -2
Query:  325 KLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFEL 588
            ++  + +P    + +P   +H+DPE+W D   EFKPERF++  +K + +  +Y PF  GPR C+G  FAL+  K+A   ILQ+++F +
Sbjct:  387 EINGIVIPKDCIVLVPTWTLHRDPEIWSDPE-EFKPERFSKE-NKESIDPYTYMPFGAGPRNCIGMRFALIMIKLAMVEILQSFTFSV 472          
The following BLAST results are available for this feature:
BLAST of CB304913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
CP3AJ_CAPAE2.961e-1339.77Cytochrome P450 3A19 (Fragment) OS=Capra aegagrus ... [more]
CP131_DROME3.868e-1339.58Probable cytochrome P450 313a1 OS=Drosophila melan... [more]
CP4AP_PIG5.051e-1338.39Cytochrome P450 4A25 OS=Sus scrofa GN=CYP4A25 PE=2... [more]
C13A6_CAEEL8.616e-1336.36Putative cytochrome P450 CYP13A6 OS=Caenorhabditis... [more]
C13A3_CAEEL1.470e-1242.05Putative cytochrome P450 CYP13A3 OS=Caenorhabditis... [more]
CP3AB_MOUSE2.507e-1238.20Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE... [more]
CP3A1_RAT2.507e-1237.08Cytochrome P450 3A1 OS=Rattus norvegicus GN=Cyp3a1... [more]
CP341_MOUSE3.274e-1235.96Cytochrome P450 3A41 OS=Mus musculus GN=Cyp3a41a P... [more]
CP3AC_CANFA4.276e-1235.96Cytochrome P450 3A12 OS=Canis familiaris GN=CYP3A1... [more]
CP3AR_ONCMY5.585e-1237.50Cytochrome P450 3A27 OS=Oncorhynchus mykiss GN=cyp... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_H12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_H12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304913 ID=CB304913; Name=CB304913; organism=Citrus sinensis; type=EST; length=595bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTATAATATTTAATTTCAA
TTAATCACAAAAAAATAATACAGTGTAGCACCAAATATTGTACAATATTA
TTATAATACAGTACTAATGCAATACAGTATAATACAATACAATGGGCCAA
ACGCACCCTAAATACATTAAACTTCATTATAAAAAAGTCTACATTGGCAT
CATGCTCATCTTATAGTTGCCGGTATTAATTATTTTTGCACCATAGTTTC
CGTAAAATCAATTGGGTACCCAGTTCCGGATGAAGGGTTGGAACCGCCGT
TGGAGCATGGACATAGGATGGAGACAACTCGAATGAGTAGTTTTGAAGAA
TCATTGTCGTGGCCATTTTTGCTTCTACTAAAGCAAAATTTTGTCCAACA
CATATCCTAGGACCCAATGCGAATGGGAAATATGAAACTTGATTTTTCGC
CGCCTTTGAAATTCCTTCCGCAAACCTTTCCGGCTTAAACTCAACTGCAT
CGTCACCCCAAAGTTCAGGATCCTGGTGAACTAGGATCATTGGCAAGCCA
ATTTGAACCCCAGCGGGTAATGTCAAGTTTCCGAGTTTCGTTTCC
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