CB304913

Overview
NameCB304913
Unique NameCB304913
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13203 contig Csv1_Contig13203:1..591. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CP3A2_RAT (Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.585e-12
Identity = 35/89 (39.33%), Postives = 53/89 (59.55%), Query Frame = -2
Query:  328 ETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 594
            + +L  L +P G  + +P   +H DP+ W     EF PERF++  +K + +   Y PF  GPR C+G  FAL+  K+A T +LQN+SF+
Sbjct:  381 DIELDGLFIPKGSVVTIPTYALHHDPQHWPKPE-EFHPERFSKE-NKGSIDPYVYLPFGNGPRNCIGMRFALMNMKLALTKVLQNFSFQ 467          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CP3AA_MESAU (Lithocholate 6-beta-hydroxylase OS=Mesocricetus auratus GN=CYP3A10 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.294e-12
Identity = 32/87 (36.78%), Postives = 54/87 (62.07%), Query Frame = -2
Query:  328 KLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 588
            ++  L +P G+ + +P   +H+DPE W +   EF+PERF++  +K + +   Y PF  GPR C+G  FAL+  K+A   +LQN++ +
Sbjct:  382 EINGLFIPKGITVMVPTYPLHRDPEYWPEPE-EFRPERFSKE-NKGSIDPYVYMPFGNGPRNCIGMRFALLSMKLAVVSVLQNFTLQ 466          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CP3AG_MOUSE (Cytochrome P450 3A16 OS=Mus musculus GN=Cyp3a16 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.527e-12
Identity = 32/89 (35.96%), Postives = 55/89 (61.80%), Query Frame = -2
Query:  328 ETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 594
            + ++  + +P G  + +P  ++H DP+ W +   EF+PERF++  +K + +   Y PF  GPR C+G  FAL+  K+A   +LQN+SF+
Sbjct:  381 DVEINGIYIPKGSTVIIPSYVLHHDPQHWPEPE-EFQPERFSKE-NKGSIDPYVYLPFGNGPRNCIGMRFALMNMKLALIKVLQNFSFQ 467          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: C13A8_CAEEL (Putative cytochrome P450 CYP13A8 OS=Caenorhabditis elegans GN=cyp-13A8 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.527e-12
Identity = 34/88 (38.64%), Postives = 51/88 (57.95%), Query Frame = -2
Query:  328 TKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 591
            T +G   + AGV + +    +H D  +WG+D  EFKPER+   ++     Q +Y  F  GPR+C+G  FAL+E K   + IL+ Y+FE
Sbjct:  396 TVIGEQIVEAGVDVMIDTWTLHHDKNVWGNDVEEFKPERWDSPLTP----QQAYLSFGAGPRVCLGMRFALLEQKGLLSHILKKYTFE 479          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CP4AO_PIG (Cytochrome P450 4A24 OS=Sus scrofa GN=CYP4A24 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 42/112 (37.50%), Postives = 65/112 (58.04%), Query Frame = -2
Query:  244 TLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELSPSYVHAPTAVP--TLHPELGTQLILRKL 573
            +LPAG+ + L +  +H +P++W +   EF P RFA G   +A++  ++ PF+ G R C+G+ FA+ E K+A  + L    FEL+P     P A P   L+ + G  L LRKL
Sbjct:  398 SLPAGITLSLSIYGLHHNPQVWPNPE-EFDPSRFAPG---SARHSHAFMPFSGGSRNCIGKQFAMNEMKVAVALTL--LRFELAPDPSRKPIATPEVVLNSKNGIHLKLRKL 503          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CP3AD_MOUSE (Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 31/89 (34.83%), Postives = 54/89 (60.67%), Query Frame = -2
Query:  328 ETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 594
            + ++  L +P G  + +P   +H+DP+ W +   EF+PERF++  ++ + N   Y PF  GPR C+G  FAL+  K+A   +LQN++ +
Sbjct:  380 DVEINGLFIPKGTVVMIPTFALHKDPKYWPEPE-EFRPERFSKK-NQDSINPYMYLPFGSGPRNCIGMRFALINMKVALVRVLQNFTVQ 466          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CP3A7_HUMAN (Cytochrome P450 3A7 OS=Homo sapiens GN=CYP3A7 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 35/92 (38.04%), Postives = 54/92 (58.70%), Query Frame = -2
Query:  328 ETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVS---YFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 594
            + ++  + +P GV + +P  ++H DP+ W +   +F PERF    SK  K+ +    Y PF  GPR C+G  FALV  K+A   +LQN+SF+
Sbjct:  380 DVEINGMFIPKGVVVMIPSYVLHHDPKYWREPE-KFLPERF----SKKNKDNIDPYIYTPFGSGPRNCIGMRFALVNMKLALVRVLQNFSFK 466          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: C340_ORYLA (Cytochrome P450 3A40 OS=Oryzias latipes GN=cyp3a40 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 35/88 (39.77%), Postives = 53/88 (60.23%), Query Frame = -2
Query:  325 KLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFEL 588
            ++  L +P  + + +P   +H+DPELW +   +FKPERF++  +K   +  +Y PF  GPR C+G  FALV  K+A   ILQ Y F +
Sbjct:  383 EVNGLVIPKDMVVMVPTWPLHRDPELWPEPE-KFKPERFSKE-NKDTFDPYTYMPFGAGPRNCIGMRFALVMMKLAVVEILQTYDFSV 468          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CP3A5_HUMAN (Cytochrome P450 3A5 OS=Homo sapiens GN=CYP3A5 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 32/89 (35.96%), Postives = 53/89 (59.55%), Query Frame = -2
Query:  328 ETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 594
            + ++  + +P G  + +P   +H DP+ W +   EF+PERF++   K + +   Y PF  GPR C+G  FAL+  K+A   +LQN+SF+
Sbjct:  380 DVEINGVFIPKGSMVVIPTYALHHDPKYWTEPE-EFRPERFSK--KKDSIDPYIYTPFGTGPRNCIGMRFALMNMKLALIRVLQNFSFK 465          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CP3A9_RAT (Cytochrome P450 3A9 OS=Rattus norvegicus GN=Cyp3a9 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 32/89 (35.96%), Postives = 53/89 (59.55%), Query Frame = -2
Query:  328 ETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 594
            + ++  + +P G  + +P   +H+DP  W +   EF+PERF++  ++   N   Y PF  GPR C+G  FAL+  K+A   +LQN+SF+
Sbjct:  380 DVEINGVFIPKGTVVMIPTFALHKDPHYWPEPE-EFRPERFSKK-NQDNINPYMYLPFGNGPRNCIGMRFALMNMKVALFRVLQNFSFQ 466          
The following BLAST results are available for this feature:
BLAST of CB304913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
CP3A2_RAT5.585e-1239.33Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2... [more]
CP3AA_MESAU7.294e-1236.78Lithocholate 6-beta-hydroxylase OS=Mesocricetus au... [more]
CP3AG_MOUSE9.527e-1235.96Cytochrome P450 3A16 OS=Mus musculus GN=Cyp3a16 PE... [more]
C13A8_CAEEL9.527e-1238.64Putative cytochrome P450 CYP13A8 OS=Caenorhabditis... [more]
CP4AO_PIG1.244e-1137.50Cytochrome P450 4A24 OS=Sus scrofa GN=CYP4A24 PE=2... [more]
CP3AD_MOUSE1.244e-1134.83Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE... [more]
CP3A7_HUMAN1.244e-1138.04Cytochrome P450 3A7 OS=Homo sapiens GN=CYP3A7 PE=1... [more]
C340_ORYLA1.244e-1139.77Cytochrome P450 3A40 OS=Oryzias latipes GN=cyp3a40... [more]
CP3A5_HUMAN1.625e-1135.96Cytochrome P450 3A5 OS=Homo sapiens GN=CYP3A5 PE=1... [more]
CP3A9_RAT2.122e-1135.96Cytochrome P450 3A9 OS=Rattus norvegicus GN=Cyp3a9... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_H12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_H12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304913 ID=CB304913; Name=CB304913; organism=Citrus sinensis; type=EST; length=595bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTATAATATTTAATTTCAA
TTAATCACAAAAAAATAATACAGTGTAGCACCAAATATTGTACAATATTA
TTATAATACAGTACTAATGCAATACAGTATAATACAATACAATGGGCCAA
ACGCACCCTAAATACATTAAACTTCATTATAAAAAAGTCTACATTGGCAT
CATGCTCATCTTATAGTTGCCGGTATTAATTATTTTTGCACCATAGTTTC
CGTAAAATCAATTGGGTACCCAGTTCCGGATGAAGGGTTGGAACCGCCGT
TGGAGCATGGACATAGGATGGAGACAACTCGAATGAGTAGTTTTGAAGAA
TCATTGTCGTGGCCATTTTTGCTTCTACTAAAGCAAAATTTTGTCCAACA
CATATCCTAGGACCCAATGCGAATGGGAAATATGAAACTTGATTTTTCGC
CGCCTTTGAAATTCCTTCCGCAAACCTTTCCGGCTTAAACTCAACTGCAT
CGTCACCCCAAAGTTCAGGATCCTGGTGAACTAGGATCATTGGCAAGCCA
ATTTGAACCCCAGCGGGTAATGTCAAGTTTCCGAGTTTCGTTTCC
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