CB304913

Overview
NameCB304913
Unique NameCB304913
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CP3A6_RABIT (Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CYP3A6 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.620e-11
Identity = 33/82 (40.24%), Postives = 51/82 (62.20%), Query Frame = -2
Query:  325 LPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFEL 570
            +P G  + +P   +H+DP+ W +   EF+PERF++  +K   N   Y PF  GPR C+G  FAL+  K+A   ++QN+SF+L
Sbjct:  386 IPKGTIVMMPTYALHRDPQHWTEPD-EFRPERFSKK-NKDNINPYIYHPFGAGPRNCLGMRFALMNIKLALVRLMQNFSFKL 465          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: C356_FUNHE (Cytochrome P450 3A56 OS=Fundulus heteroclitus GN=cyp3a56 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.620e-11
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = -2
Query:  325 KLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVS---YFPFALGPRICVGQNFALVEAKMATTMILQNYSFEL 588
            ++  + +P  + + +P   +H+DPE+W +    FKPERF    SK  K+ +    Y PF  GPR C+G  FALV  K+A   ILQ YSF +
Sbjct:  381 EINGIVIPKDMVVMIPTWPLHRDPEIWPEPEA-FKPERF----SKKNKDNIDPYIYMPFGSGPRNCIGMRFALVLIKLAVVEILQQYSFSV 466          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CPXB_BACME (Bifunctional P-450/NADPH-P450 reductase OS=Bacillus megaterium GN=CYP102A1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 38/103 (36.89%), Postives = 57/103 (55.34%), Query Frame = -2
Query:  274 GNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELSPSYVHAPTAVPTLHPE 582
            G   L  G ++ + +  +H+D  +WGDD  EF+PERF    + +A  Q ++ PF  G R C+GQ FAL EA +   M+L+++ FE   +Y        TL PE
Sbjct:  344 GEYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFE---NPSAIPQHAFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPE 443          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CP3A4_HUMAN (Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1 SV=4)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = -2
Query:  328 ETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVS---YFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 594
            + ++  + +P GV + +P   +H+DP+ W +   +F PERF    SK  K+ +    Y PF  GPR C+G  FAL+  K+A   +LQN+SF+
Sbjct:  380 DVEINGMFIPKGVVVMIPSYALHRDPKYWTEPE-KFLPERF----SKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFK 466          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: C330_FUNHE (Cytochrome P450 3A30 OS=Fundulus heteroclitus GN=cyp3a30 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = -2
Query:  325 KLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVS---YFPFALGPRICVGQNFALVEAKMATTMILQNYSFEL 588
            ++  + +P  + + +P   +H+DPE+W +    FKPERF    SK  K+ +    Y PF  GPR C+G  FALV  K+A   ILQ YSF +
Sbjct:  381 EINGVVIPKDMVVMIPTWPLHRDPEIWPEPEA-FKPERF----SKKNKDNIDPYIYMPFGSGPRNCIGMRFALVLIKLAVVEILQQYSFSV 466          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: C13B1_CAEEL (Putative cytochrome P450 cyp-13B1 OS=Caenorhabditis elegans GN=cyp-13B1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 32/85 (37.65%), Postives = 53/85 (62.35%), Query Frame = -2
Query:  337 TKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNY 591
            T LG++ +  GV+I   ++ +H+  E+WG++A +F PER+ E    ++++ +S+ PF  GPR CVG    L EAK A   +L+ Y
Sbjct:  396 TTLGDIYIDKGVKIEADVMSLHRSKEIWGENADDFVPERWLE---PSSRHTMSWIPFGAGPRQCVGMRLGLSEAKTALAHLLRRY 477          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CP3AL_CALJA (Cytochrome P450 3A21 OS=Callithrix jacchus GN=CYP3A21 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 32/89 (35.96%), Postives = 53/89 (59.55%), Query Frame = -2
Query:  328 ETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 594
            + ++  + +P GV + +P   +H DP+ W +   +F PERF++  +K   +   Y PF  GPR C+G  FAL+  K+A   +LQN+SF+
Sbjct:  380 DVEINGVFIPKGVVVMIPSYALHYDPKYWTEPE-KFLPERFSKN-NKDNIDPYIYTPFGTGPRNCIGMRFALMNMKLALIRVLQNFSFK 466          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CP3AH_CAVPO (Cytochrome P450 3A17 OS=Cavia porcellus GN=CYP3A17 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 38/113 (33.63%), Postives = 62/113 (54.87%), Query Frame = -2
Query:  250 KLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELSPSYVHAPTAVPTLHPELGTQLILR 588
            ++  ++ P G  + +P   +H+D + W +   EF+PERF++  +K   +   Y PF  GPR C+G   AL+  K+A   +LQN+SF     Y    T +P     LG+Q+IL+
Sbjct:  382 EINGMSFPKGTGVMIPSFALHRDSKYWPEPD-EFRPERFSKK-NKENIDPYIYMPFGNGPRNCIGMRMALMNLKLALIRLLQNFSF-----YTCKETQIPL---RLGSQVILQ 484          
The following BLAST results are available for this feature:
BLAST of CB304913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
CP3A6_RABIT3.620e-1140.24Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CY... [more]
C356_FUNHE3.620e-1139.56Cytochrome P450 3A56 OS=Fundulus heteroclitus GN=c... [more]
CPXB_BACME4.728e-1136.89Bifunctional P-450/NADPH-P450 reductase OS=Bacillu... [more]
CP3A4_HUMAN4.728e-1136.96Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1... [more]
C330_FUNHE4.728e-1139.56Cytochrome P450 3A30 OS=Fundulus heteroclitus GN=c... [more]
C13B1_CAEEL6.175e-1137.65Putative cytochrome P450 cyp-13B1 OS=Caenorhabditi... [more]
CP3AL_CALJA8.065e-1135.96Cytochrome P450 3A21 OS=Callithrix jacchus GN=CYP3... [more]
CP3AH_CAVPO8.065e-1133.63Cytochrome P450 3A17 OS=Cavia porcellus GN=CYP3A17... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_H12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_H12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304913 ID=CB304913; Name=CB304913; organism=Citrus sinensis; type=EST; length=595bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTATAATATTTAATTTCAA
TTAATCACAAAAAAATAATACAGTGTAGCACCAAATATTGTACAATATTA
TTATAATACAGTACTAATGCAATACAGTATAATACAATACAATGGGCCAA
ACGCACCCTAAATACATTAAACTTCATTATAAAAAAGTCTACATTGGCAT
CATGCTCATCTTATAGTTGCCGGTATTAATTATTTTTGCACCATAGTTTC
CGTAAAATCAATTGGGTACCCAGTTCCGGATGAAGGGTTGGAACCGCCGT
TGGAGCATGGACATAGGATGGAGACAACTCGAATGAGTAGTTTTGAAGAA
TCATTGTCGTGGCCATTTTTGCTTCTACTAAAGCAAAATTTTGTCCAACA
CATATCCTAGGACCCAATGCGAATGGGAAATATGAAACTTGATTTTTCGC
CGCCTTTGAAATTCCTTCCGCAAACCTTTCCGGCTTAAACTCAACTGCAT
CGTCACCCCAAAGTTCAGGATCCTGGTGAACTAGGATCATTGGCAAGCCA
ATTTGAACCCCAGCGGGTAATGTCAAGTTTCCGAGTTTCGTTTCC
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