CB304915

Overview
NameCB304915
Unique NameCB304915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304915_ssr284 microsatellite CB304915_ssr284:284..293. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2077 contig Csv1_Contig2077:158..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.833e-41
Identity = 84/132 (63.64%), Postives = 105/132 (79.55%), Query Frame = -2
Query:  302 DNKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKRE-EEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKIA 694
            + K+ N P+R Y+RDAKAMAATPADV E+PN+Y F+VDMPG+K  +IKVQVE+DNVL +SGER+RE +E +G KYVRMERR+GKFMRKF LPENA+++ ISAVC DGVL VTV           KTI+V++A
Sbjct:   24 NEKTRNNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVTVQKLPPPEPKKPKTIQVQVA 155          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.023e-37
Identity = 76/130 (58.46%), Postives = 103/130 (79.23%), Query Frame = -2
Query:  302 KSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKRE-EEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKIA 688
            K+ N P+R Y+RDAKAMAATPADV E+P++YVF VDMPG+K  +I+VQ+E++NVL +SG+R+R+ +E +G K+VRMERR+GKFMRKF LP+NA++E ISA C DGVL VT+           KTI+V++A
Sbjct:   27 KTRNNPSRAYMRDAKAMAATPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVTIPKLPPPEPKKPKTIQVQVA 156          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HSP19_ORYSJ (19.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP19.0 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.061e-29
Identity = 70/133 (52.63%), Postives = 91/133 (68.42%), Query Frame = -2
Query:  302 NAPTRTYVRDAKAMAATPADVKEYPNS--YVFIVDMPGLKSGDIKVQVEDDNVLPISGERKR-----EEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKIA 679
            N PTR YVRD +AMA TP DVKE   S   V  VDMPG+   D++V+VED NVL ISGER+R     ++  +G KY+RMERR+GKFMR+F LPE+A+++ + A  +DGVLTVTVD          + +EVK+A
Sbjct:   33 NPPTRAYVRDRRAMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVTVDKKPPPEPKKPRVVEVKVA 165          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 56/111 (50.45%), Postives = 73/111 (65.77%), Query Frame = -2
Query:  359 NKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 691
            N  S+A    + R+  A  +T  D KE P ++VF  D+PGLK  ++KVQ+EDD VL ISGER  E+E     + R+ER  GKFMR+F LPENA VE + A  ++GVLTVTV
Sbjct:   34 NTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTV 144          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 52/109 (47.71%), Postives = 77/109 (70.64%), Query Frame = -2
Query:  359 SSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 685
            S+++P+ ++ R+  A  +T  D KE P ++VF  D+PGLK  ++KV+VEDD VL ISGER  E+E    ++ R+ER  GKF+R+F LPENA ++ + A  ++GVLTVTV
Sbjct:   33 SNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTV 141          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.655e-22
Identity = 54/109 (49.54%), Postives = 70/109 (64.22%), Query Frame = -2
Query:  359 SSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 685
            SS     +  RD  A      D KE P ++VF  D+PGLK  ++KV+VED NVL ISGER +E E+   K+ R+ER  GKFMR+F LPENA +E + A  ++GVLTV V
Sbjct:   34 SSALANASTARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVV 142          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.235e-22
Identity = 50/109 (45.87%), Postives = 76/109 (69.72%), Query Frame = -2
Query:  359 SSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 685
            +++A + ++ R+  A  +T  D KE P ++VF  D+PG+K  ++KV++EDD VL ISGER  E+E    ++ R+ER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   33 NNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTV 141          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.064e-21
Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = -2
Query:  359 DAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 652
            ++ A A T  D KE P  +VF VD+PGLK  ++KV+VE+D VL ISGER  E+E    K+ RMER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   40 ESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTV 137          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.369e-21
Identity = 50/102 (49.02%), Postives = 76/102 (74.51%), Query Frame = -2
Query:  356 RDAKAMAATPA--DVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVD 655
            +D  +MA +PA  D KE P  +V ++D+PGLK  +IKV+VE++ VL +SGERK+EEEK G  + R+ER  GKF R+F LP+N +++++ A  ++GVLT+T+D
Sbjct:   57 KDEASMAMSPARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLTLD 158          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.369e-21
Identity = 53/110 (48.18%), Postives = 70/110 (63.64%), Query Frame = -2
Query:  359 KSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 688
            K  + PT +   +  A  +T  D KE P ++VF  D+PGLK  ++KVQ+EDD VL ISGER  E+E     + R+ER  GKF R+F LPENA V  + A  ++GVLTVTV
Sbjct:   28 KDFHVPTSSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTV 137          
The following BLAST results are available for this feature:
BLAST of CB304915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS176_ARATH7.833e-4163.6417.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HS177_ARATH4.023e-3758.4617.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP19_ORYSJ1.061e-2952.6319.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP16_SOYBN1.256e-2250.4518.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA1.256e-2247.7118.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HS181_ARATH3.655e-2249.5418.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP12_MEDSA6.235e-2245.8718.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_SOLLC1.064e-2154.0817.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HSP41_SOYBN2.369e-2149.0222.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP14_SOYBN2.369e-2148.1817.5 kDa class I heat shock protein OS=Glycine max... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_A02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_A02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304915 ID=CB304915; Name=CB304915; organism=Citrus sinensis; type=EST; length=701bp
TTTTTTTTTTTTTTTTTTTTTTTTTTAGATAAAAGCTGGATTTTTCATTA
ATTATAACAACTAGATGTCTACCAGTAGACGGCCGTCAGCTTCCCCTCCG
GAATGCCAAAGACCGAACCACAAACCAGTGAACAGAGAGAATTTTGGACA
AAAAAGGGAAGAAAGAGAAAAAAAGAAAAAGGAAGAGGAGATTACAGAGG
CATAGTACCGTCAAACCCACAAGCAAAATTATTCATAACAACCGGCAAAT
AGAAAAGACATCAGCACCCACAATCCAGCATATTCTCTCTCTCAAAGTTC
AAGCAATCTTAACCTCAATGGTCTTGGGCTTCTTGGGCTCCGGCGGTGGC
AGCTTATCGACAGTCACAGTCAACACTCCGTCCTGACACACCGCCGAAAT
GGCTTCAACGTTAGCATTCTCAGGCAGCACAAATTTCCTCATAAACTTGC
CAACCCTCCTCTCCATTCTCACATACTTGGCCCCATCTTTCTCCTCCTCC
CGCTTCCTCTCACCGCTTATGGGCAGCACATTGTCGTCCTCCACTTGGAC
CTTGATGTCCCCCGACTTCAGTCCGGGCATATCGACGATGAACACGTACG
AGTTCGGATACTCCTTCACGTCCGCAGGCGTCGCCGCCATTGCCTTGGCG
TCTCTCACGTACGTGCGCGTCGGCGCGTTGGATGACTTGTTGTCAGCGGA
G
back to top