CB304915

Overview
NameCB304915
Unique NameCB304915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304915_ssr284 microsatellite CB304915_ssr284:284..293. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2077 contig Csv1_Contig2077:158..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.006e-20
Identity = 51/95 (53.68%), Postives = 64/95 (67.37%), Query Frame = -2
Query:  359 AMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 643
            A   T  D KE P ++VF  D+PGLK  ++KVQ+EDD VL ISGER  E+E     + R+ER  G FMR+F LPENA VE + A  ++GVLTVTV
Sbjct:   42 AFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTV 136          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.006e-20
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = -2
Query:  359 DAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 652
            D  A A    D KE P S+VF  D+PG+K  ++KV+VE+ NVL ISG+R +E+E    K+ R+ER  G+FMR+F LPENA V+ + A  ++GVLTVTV
Sbjct:   36 DTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTV 133          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.006e-20
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = -2
Query:  359 DAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 652
            D  A A    D KE P S+VF  D+PG+K  ++KV+VE+ NVL ISG+R +E+E    K+ R+ER  G+FMR+F LPENA V+ + A  ++GVLTVTV
Sbjct:   36 DTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTV 133          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.620e-20
Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = -2
Query:  359 KSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 688
            K  + PT +   +  A   T  D KE   ++V   D+PGLK  ++KVQ+EDD VL ISGER  E+E     + R++R  GKFMR+F LPENA VE + A  ++GVLTVT+
Sbjct:   28 KDFHVPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTI 137          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.421e-20
Identity = 50/98 (51.02%), Postives = 67/98 (68.37%), Query Frame = -2
Query:  359 DAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 652
            +  A A T  D KE P ++VF  D+PGLK  ++KV+VE+D VL ISGER  E+E     + R+ER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   40 ETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTV 137          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.836e-20
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = -2
Query:  359 SNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 682
            +NAP      D  A      D +E P ++VF  D+PGL+  ++KV+VED N+L ISGER  E E+   K+ R+ER  GKF R+F LPENA +E I A  ++GVL+VTV
Sbjct:   37 ANAPAM----DVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTV 140          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.622e-20
Identity = 48/98 (48.98%), Postives = 68/98 (69.39%), Query Frame = -2
Query:  359 DAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 652
            +  A A    D KE P ++VF  D+PGLK  ++KV+V+D N+L ISGER +E+E+   ++ R+ER  GKF+R+F LP+NA  E I A  ++GVLTVTV
Sbjct:   47 ETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTV 144          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.954e-20
Identity = 44/88 (50.00%), Postives = 67/88 (76.14%), Query Frame = -2
Query:  359 DVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 622
            D KE P  +V +VD+PGLK  DIK++VE++ VL +SGERK+EE+K G  + R+ER  GKF R+F LP+N +++++ A  ++GVLT+T+
Sbjct:   78 DWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLTL 165          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.954e-20
Identity = 47/99 (47.47%), Postives = 68/99 (68.69%), Query Frame = -2
Query:  359 RDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 655
            ++  A   T  D KE P ++VF  D+PGLK  ++KV++E+  VL ISGER +E+E+   K+ R+ER  GKF+R+F LPENA V+ + A   +GV+TVTV
Sbjct:   42 KETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTV 140          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HS186_ORYSJ (18.6 kDa class III heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.6 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.452e-19
Identity = 49/99 (49.49%), Postives = 66/99 (66.67%), Query Frame = -2
Query:  359 PADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPI-------SGERKREEEKDGAKYVRMERRVG--KFMRKFVLPENANVEAISAVCQDGVLTVTV 628
            P D+ E P  Y F++D+PGL   DI+V +E+D VL +       +G+RKREEE+   KY+R+ERR     F RKF LPE+A+   ISA C++GVLTVTV
Sbjct:   56 PVDIMETPGEYAFVLDVPGLSKSDIQVTLEEDRVLVMKSSNGAGNGKRKREEEEGECKYIRLERRASPRAFARKFRLPEDADTGGISARCENGVLTVTV 154          
The following BLAST results are available for this feature:
BLAST of CB304915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP13_SOYBN2.006e-2053.6817.5 kDa class I heat shock protein OS=Glycine max... [more]
HS16B_ORYSJ2.006e-2051.0216.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS16A_ORYSJ2.006e-2051.0216.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HSP15_SOYBN2.620e-2046.3617.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_SOLPE3.421e-2051.0217.6 kDa class I heat shock protein OS=Solanum per... [more]
HS17C_ARATH5.836e-2047.2217.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS17A_ORYSJ7.622e-2048.9817.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP41_PEA9.954e-2050.0022.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP11_DAUCA9.954e-2047.4717.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS186_ORYSJ6.452e-1949.4918.6 kDa class III heat shock protein OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_A02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_A02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304915 ID=CB304915; Name=CB304915; organism=Citrus sinensis; type=EST; length=701bp
TTTTTTTTTTTTTTTTTTTTTTTTTTAGATAAAAGCTGGATTTTTCATTA
ATTATAACAACTAGATGTCTACCAGTAGACGGCCGTCAGCTTCCCCTCCG
GAATGCCAAAGACCGAACCACAAACCAGTGAACAGAGAGAATTTTGGACA
AAAAAGGGAAGAAAGAGAAAAAAAGAAAAAGGAAGAGGAGATTACAGAGG
CATAGTACCGTCAAACCCACAAGCAAAATTATTCATAACAACCGGCAAAT
AGAAAAGACATCAGCACCCACAATCCAGCATATTCTCTCTCTCAAAGTTC
AAGCAATCTTAACCTCAATGGTCTTGGGCTTCTTGGGCTCCGGCGGTGGC
AGCTTATCGACAGTCACAGTCAACACTCCGTCCTGACACACCGCCGAAAT
GGCTTCAACGTTAGCATTCTCAGGCAGCACAAATTTCCTCATAAACTTGC
CAACCCTCCTCTCCATTCTCACATACTTGGCCCCATCTTTCTCCTCCTCC
CGCTTCCTCTCACCGCTTATGGGCAGCACATTGTCGTCCTCCACTTGGAC
CTTGATGTCCCCCGACTTCAGTCCGGGCATATCGACGATGAACACGTACG
AGTTCGGATACTCCTTCACGTCCGCAGGCGTCGCCGCCATTGCCTTGGCG
TCTCTCACGTACGTGCGCGTCGGCGCGTTGGATGACTTGTTGTCAGCGGA
G
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