CB304915

Overview
NameCB304915
Unique NameCB304915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304915_ssr284 microsatellite CB304915_ssr284:284..293. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2077 contig Csv1_Contig2077:158..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.652e-15
Identity = 41/101 (40.59%), Postives = 65/101 (64.36%), Query Frame = -2
Query:  359 AKAMAATPA----DVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 649
            A A A  P+    D KE   ++VF+ DMPG++  +++V+VE++ VL ISG+R R  E+ G ++ R+ER   +F+R   LP NAN + + A   +GVLT+T+
Sbjct:   60 AAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTITI 160          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 40/100 (40.00%), Postives = 66/100 (66.00%), Query Frame = -2
Query:  365 DAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKD----GAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTV 652
            D   ++    D +E  +++  +VD+PG++  D++V+VED+ VL ISGER+REE  +    G  + R ER  G+F R+  LP+NA++++I+A   +GVLTV
Sbjct:   69 DVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTV 168          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = -2
Query:  359 DVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRV-----GKFMRKFVLPENANVEAISAVCQDGVLTVTV 622
            D  E  NS++F +++PG    DIKVQ+E+ NVL I GE  +EE+K+   +   ER        +F+R+  LPEN  V+ + A  ++GVLTV V
Sbjct:   25 DWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVLTVVV 117          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 45/104 (43.27%), Postives = 57/104 (54.81%), Query Frame = -2
Query:  359 AKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISG-------ERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 649
            A A A    D  E P S+V  +++PGL   D+KVQVED NVL + G       E++RE EKD   +V  ER   +F R+  LP    VE I A   +GVLTV V
Sbjct:   24 ASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHV-AERGRPEFAREVALPAEVRVEQIRASVDNGVLTVVV 126          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 38/99 (38.38%), Postives = 59/99 (59.60%), Query Frame = -2
Query:  359 DAKAMAATPADVKEYPNSYVFIVDMP-GLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 652
            D  A A T  + +E   +YVF  D+P G+K  +++V+V++ NVL I+GER    E+ G +   +ER    F  +F LP++A V+ + A    G+LTVTV
Sbjct:   34 DTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVTV 132          
The following BLAST results are available for this feature:
BLAST of CB304915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS189_ORYSJ5.652e-1540.5918.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS232_ORYSJ4.785e-1440.0023.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS157_ARATH5.849e-1240.8615.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]
HSP16_ORYSJ9.977e-1243.2716.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HS17B_ORYSJ1.303e-1138.3817.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_A02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_A02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304915 ID=CB304915; Name=CB304915; organism=Citrus sinensis; type=EST; length=701bp
TTTTTTTTTTTTTTTTTTTTTTTTTTAGATAAAAGCTGGATTTTTCATTA
ATTATAACAACTAGATGTCTACCAGTAGACGGCCGTCAGCTTCCCCTCCG
GAATGCCAAAGACCGAACCACAAACCAGTGAACAGAGAGAATTTTGGACA
AAAAAGGGAAGAAAGAGAAAAAAAGAAAAAGGAAGAGGAGATTACAGAGG
CATAGTACCGTCAAACCCACAAGCAAAATTATTCATAACAACCGGCAAAT
AGAAAAGACATCAGCACCCACAATCCAGCATATTCTCTCTCTCAAAGTTC
AAGCAATCTTAACCTCAATGGTCTTGGGCTTCTTGGGCTCCGGCGGTGGC
AGCTTATCGACAGTCACAGTCAACACTCCGTCCTGACACACCGCCGAAAT
GGCTTCAACGTTAGCATTCTCAGGCAGCACAAATTTCCTCATAAACTTGC
CAACCCTCCTCTCCATTCTCACATACTTGGCCCCATCTTTCTCCTCCTCC
CGCTTCCTCTCACCGCTTATGGGCAGCACATTGTCGTCCTCCACTTGGAC
CTTGATGTCCCCCGACTTCAGTCCGGGCATATCGACGATGAACACGTACG
AGTTCGGATACTCCTTCACGTCCGCAGGCGTCGCCGCCATTGCCTTGGCG
TCTCTCACGTACGTGCGCGTCGGCGCGTTGGATGACTTGTTGTCAGCGGA
G
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