CB304922

Overview
NameCB304922
Unique NameCB304922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304922_ssr67 microsatellite CB304922_ssr67:67..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7528 contig Csv1_Contig7528:778..1365. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 8.025e-30
Identity = 59/71 (83.10%), Postives = 64/71 (90.14%), Query Frame = -1
Query:  391 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 603
            GFAVFMVHLATIPI GTGINPARS GAAVIYN +KAWDDQW+FWVGPF+GA  AA YHQ+ILRA A+KALG
Sbjct:  202 GFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFLGALAAAAYHQYILRASAIKALG 272          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.048e-29
Identity = 56/71 (78.87%), Postives = 64/71 (90.14%), Query Frame = -1
Query:  391 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 603
            GFAVFMVHLATIP+ GTGINPARS G AVI+N DKAWDDQW++WVGPF+GAA+AA YHQ+ILR  A+KALG
Sbjct:  211 GFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGAAVAAIYHQYILRGSAIKALG 281          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.788e-29
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = -1
Query:  400 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 603
            GFAVFMVHLATIPI GTGINPARSLGAAVIYN DKAWDD W+FWVGPFIGAAIAA YHQ++LRA A K
Sbjct:  209 GFAVFMVHLATIPITGTGINPARSLGAAVIYNNDKAWDDHWIFWVGPFIGAAIAAAYHQYVLRASAAK 276          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.788e-29
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = -1
Query:  400 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 603
            GFAVFMVHLATIPI GTGINPARSLG AVIYNKDKAWDDQW+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  213 GFAVFMVHLATIPITGTGINPARSLGTAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASAAK 280          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.049e-29
Identity = 58/71 (81.69%), Postives = 62/71 (87.32%), Query Frame = -1
Query:  391 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 603
            GFAVFMVHLATIPI GTGINPARS GAAVI+NK K WDD W+FWVGPFIGA IAAFYHQF+LRA   K+LG
Sbjct:  207 GFAVFMVHLATIPITGTGINPARSFGAAVIFNKSKPWDDHWIFWVGPFIGATIAAFYHQFVLRASGSKSLG 277          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 5.201e-29
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = -1
Query:  391 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 603
            GFAVFMVHLATIPI GTGINPARS+GAAVIYN+ KAWDD W+FW GPFIGA  AA YHQ+ILRA A+KALG
Sbjct:  204 GFAVFMVHLATIPITGTGINPARSIGAAVIYNQKKAWDDHWIFWAGPFIGALAAAAYHQYILRAAAIKALG 274          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.159e-28
Identity = 57/70 (81.43%), Postives = 62/70 (88.57%), Query Frame = -1
Query:  394 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKAL 603
            GFAVFMVHLATIPI GTGINPARS GAAVIYN +KAWDD W+FWVGPF+GA  AA YHQ+ILRA A+KAL
Sbjct:  200 GFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKAL 269          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.159e-28
Identity = 56/71 (78.87%), Postives = 62/71 (87.32%), Query Frame = -1
Query:  391 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 603
            GFAVFMVHLATIPI GTGINPARS GAAVIYNK + WDD W+FWVGPF+GA  AA YHQ++LRA A+KALG
Sbjct:  204 GFAVFMVHLATIPITGTGINPARSFGAAVIYNKKRVWDDHWIFWVGPFVGALAAAAYHQYVLRAAAIKALG 274          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.511e-28
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = -1
Query:  406 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGA 603
            GFAVFMVHLATIPI GTGINPARSLGAAV+YN  KAW DQW+FWVGPFIGAAIAA YHQ +LRA A
Sbjct:  213 GFAVFMVHLATIPITGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRASA 278          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.809e-28
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = -1
Query:  406 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGA 603
            GFAVFMVHLATIP+ GTGINPARSLGAAV+YN  KAW DQW+FWVGPFIGAAIAA YHQ +LRA A
Sbjct:  208 GFAVFMVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRASA 273          
The following BLAST results are available for this feature:
BLAST of CB304922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
PIP27_ARATH8.025e-3083.10Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP27_MAIZE1.048e-2978.87Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP25_MAIZE1.788e-2986.76Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP22_ORYSJ1.788e-2986.76Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP23_ARATH3.049e-2981.69Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP26_ORYSJ5.201e-2981.69Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP28_ARATH1.159e-2881.43Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP1_ATRCA1.159e-2878.87Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP26_MAIZE7.511e-2884.85Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
PIP25_ORYSJ9.809e-2883.33Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_B07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_B07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304922 ID=CB304922; Name=CB304922; organism=Citrus sinensis; type=EST; length=603bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTATTCATCTAATAATTTTTTTTTT
TTCCTTAAAGCACAACAATAATAATAATAATCACATACGGAGAAAATAAT
ACAAAGTAGAAAGAGACAGAAACATTGAAGAAGTGAATTCTAAGGAAAGT
GCTTGAAAACAACAGAGGGGATTACAAAAAAGCAAGCCCCCTCATTGTCT
AAGAGACTTTTTGCCTACAACTCCTTGAAAGCACAAATCACACCCCCCCT
CATTATTCACTTTTTGAAACTTAACACACCTCTACTCCTTCCCAGTTTTT
TCTTTCCAATTTTAAATCATTAACCCCATGAAGATGTGGATAATCCACTT
GTCGAAACTAAAATCAGACACGGGATTGGCTCCTGAATGAACCAAGAGCC
TTGACAGCTCCAGCTCTCAAGATGAATTGGTGGTAGAAAGCCGCAATTGC
TGCACCGATGAAGGGTCCAACCCAGAAGAGCCATTGATCATCCCAAGCCT
TGTCCTTGTTGTAAATAACAGCGGCCCCGAGACTCCTTGCTGGGTTAATG
CCAGTGCCAGGGATTGGGATTGTGGCCAAGTGTACCATGAACACAGCAAA
TCC
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