CB304922

Overview
NameCB304922
Unique NameCB304922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304922_ssr67 microsatellite CB304922_ssr67:67..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7528 contig Csv1_Contig7528:778..1365. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.673e-27
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = -1
Query:  406 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGA 603
            GFAVFMVHLATIPI GTGINPARSLG AV+YN +KAW DQW+FWVGPFIGAAIAA YHQ ILRA A
Sbjct:  211 GFAVFMVHLATIPITGTGINPARSLGVAVVYNNNKAWSDQWIFWVGPFIGAAIAALYHQVILRASA 276          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.854e-27
Identity = 56/68 (82.35%), Postives = 60/68 (88.24%), Query Frame = -1
Query:  400 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 603
            GFAVFMVHLATIPI GTGINPARSLGAAVIYN+ KAW D W+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  214 GFAVFMVHLATIPITGTGINPARSLGAAVIYNQHKAWHDHWIFWVGPLIGAAIAAAYHQYVLRASAAK 281          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.854e-27
Identity = 53/64 (82.81%), Postives = 59/64 (92.19%), Query Frame = -1
Query:  412 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 603
            GFAVF+VHLATIPI GTGINPARSLGAA+IYNKD AWDD W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  217 GFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQIVIRA 280          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.854e-27
Identity = 53/64 (82.81%), Postives = 59/64 (92.19%), Query Frame = -1
Query:  412 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 603
            GFAVF+VHLATIPI GTGINPARSLGAA+IYNKD AWDD W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  216 GFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQLVIRA 279          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.358e-27
Identity = 52/64 (81.25%), Postives = 59/64 (92.19%), Query Frame = -1
Query:  412 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 603
            GFAVF+VHLATIPI GTGINPARSLGAA+IYNKD +WDD W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  217 GFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQIVIRA 280          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.416e-26
Identity = 52/64 (81.25%), Postives = 59/64 (92.19%), Query Frame = -1
Query:  412 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 603
            GFAVF+VHLATIPI GTGINPARSLGAA+IYNKD AW+D W+FWVGPF+GAA+AA YHQ I+RA
Sbjct:  219 GFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWNDHWIFWVGPFVGAALAAIYHQVIIRA 282          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.416e-26
Identity = 52/64 (81.25%), Postives = 59/64 (92.19%), Query Frame = -1
Query:  412 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 603
            GFAVF+VHLATIPI GTGINPARSLGAA+IYN+D AW+D W+FWVGPFIGAA+AA YHQ I+RA
Sbjct:  219 GFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWNDHWIFWVGPFIGAALAAIYHQVIIRA 282          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.156e-26
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = -1
Query:  412 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 603
            GFAVF+VHLATIPI GTGINPARSLGAA+IYN+D AW D W+FWVGPFIGAA+AA YHQ I+RA
Sbjct:  222 GFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWSDHWIFWVGPFIGAALAAIYHQVIIRA 285          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 5.383e-26
Identity = 51/64 (79.69%), Postives = 58/64 (90.62%), Query Frame = -1
Query:  412 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 603
            GFAVF+VHLATIPI GTGINPARSLGAA+IYN+  AWDD W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  218 GFAVFLVHLATIPITGTGINPARSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRA 281          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.383e-26
Identity = 51/64 (79.69%), Postives = 58/64 (90.62%), Query Frame = -1
Query:  412 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 603
            GFAVF+VHLATIPI GTGINPARSLGAA+I+NKD AWDD W+FWVGPFIGAA+AA YH  ++RA
Sbjct:  216 GFAVFLVHLATIPITGTGINPARSLGAAIIFNKDNAWDDHWVFWVGPFIGAALAALYHVIVIRA 279          
The following BLAST results are available for this feature:
BLAST of CB304922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
PIP24_ORYSJ1.673e-2784.85Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
PIP23_ORYSJ2.854e-2782.35Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
PIP15_ARATH2.854e-2782.81Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH2.854e-2782.81Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP14_ARATH6.358e-2781.25Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP11_ORYSJ1.416e-2681.25Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP12_MAIZE2.416e-2681.25Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP13_MAIZE3.156e-2681.25Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP12_ORYSJ5.383e-2679.69Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP12_ARATH5.383e-2679.69Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_B07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_B07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304922 ID=CB304922; Name=CB304922; organism=Citrus sinensis; type=EST; length=603bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTATTCATCTAATAATTTTTTTTTT
TTCCTTAAAGCACAACAATAATAATAATAATCACATACGGAGAAAATAAT
ACAAAGTAGAAAGAGACAGAAACATTGAAGAAGTGAATTCTAAGGAAAGT
GCTTGAAAACAACAGAGGGGATTACAAAAAAGCAAGCCCCCTCATTGTCT
AAGAGACTTTTTGCCTACAACTCCTTGAAAGCACAAATCACACCCCCCCT
CATTATTCACTTTTTGAAACTTAACACACCTCTACTCCTTCCCAGTTTTT
TCTTTCCAATTTTAAATCATTAACCCCATGAAGATGTGGATAATCCACTT
GTCGAAACTAAAATCAGACACGGGATTGGCTCCTGAATGAACCAAGAGCC
TTGACAGCTCCAGCTCTCAAGATGAATTGGTGGTAGAAAGCCGCAATTGC
TGCACCGATGAAGGGTCCAACCCAGAAGAGCCATTGATCATCCCAAGCCT
TGTCCTTGTTGTAAATAACAGCGGCCCCGAGACTCCTTGCTGGGTTAATG
CCAGTGCCAGGGATTGGGATTGTGGCCAAGTGTACCATGAACACAGCAAA
TCC
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