CB304922

Overview
NameCB304922
Unique NameCB304922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304922_ssr67 microsatellite CB304922_ssr67:67..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7528 contig Csv1_Contig7528:778..1365. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.030e-26
Identity = 51/64 (79.69%), Postives = 58/64 (90.62%), Query Frame = -1
Query:  412 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 603
            GFAVF+VHLATIPI GTGINPARSLGAA+IYNKD +WDD W+FWVGPFIGAA+AA YH  ++RA
Sbjct:  216 GFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRA 279          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.030e-26
Identity = 51/64 (79.69%), Postives = 58/64 (90.62%), Query Frame = -1
Query:  412 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 603
            GFAVF+VHLATIPI GTGINPARSLGAA+IYNKD +WDD W+FWVGPFIGAA+AA YH  ++RA
Sbjct:  216 GFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRA 279          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.951e-25
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = -1
Query:  412 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 603
            GFAVF+VHLATIPI GTGINPARSLGAA+IYN + AW+D W+FWVGP IGAA+AA YHQ I+RA
Sbjct:  217 GFAVFLVHLATIPITGTGINPARSLGAAIIYNDEHAWNDHWIFWVGPMIGAALAAIYHQIIIRA 280          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.015e-24
Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = -1
Query:  412 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 603
            GFAVF+VHLATIPI GTGINPARSLGAA++YN+  AW+D W+FWVGPFIGAA+AA YH  I+RA
Sbjct:  218 GFAVFLVHLATIPITGTGINPARSLGAAIVYNRSHAWNDHWIFWVGPFIGAALAAIYHVVIIRA 281          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.732e-24
Identity = 48/64 (75.00%), Postives = 57/64 (89.06%), Query Frame = -1
Query:  412 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 603
            GFAVF+VHLATIPI GTGINPARSLGAA+++NK   W+D W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  220 GFAVFLVHLATIPITGTGINPARSLGAAIVFNKKIGWNDHWIFWVGPFIGAALAALYHQVVIRA 283          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.954e-24
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = -1
Query:  394 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKAL 603
            GFAVF+VHLATIPI GTGINPARSLGAAV+YN+  AW D W+FWVGP IGA +AA YH+ +LR  A KAL
Sbjct:  211 GFAVFVVHLATIPITGTGINPARSLGAAVLYNQHAAWKDHWIFWVGPVIGAFLAAAYHKLVLRGEAAKAL 280          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.857e-24
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = -1
Query:  412 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 603
            GFAVF+VHLATIPI GTGINPARSLGAA++YN+  AW D W+FWVGPFIGAA+AA YH  ++RA
Sbjct:  218 GFAVFLVHLATIPITGTGINPARSLGAAIVYNRAHAWHDHWIFWVGPFIGAALAAIYHVVVIRA 281          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.593e-24
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = -1
Query:  412 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 603
            GFAVF+VHLAT+ I GTGINPARSLGAAVIYN+  AW D W+FWVGPFIGAA+AA YHQ I+RA
Sbjct:  217 GFAVFLVHLATMGITGTGINPARSLGAAVIYNQHHAWADHWIFWVGPFIGAALAAIYHQVIIRA 280          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.241e-22
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = -1
Query:  412 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 603
            GFAVF+VHLATIPI GTGINPARSLGAA+IY+    W   W+FWVGPF GAA+AA YHQ +LRA
Sbjct:  224 GFAVFLVHLATIPITGTGINPARSLGAAIIYDNPHGWHGHWIFWVGPFAGAALAAVYHQVVLRA 287          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.323e-19
Identity = 45/71 (63.38%), Postives = 50/71 (70.42%), Query Frame = -1
Query:  397 GFAVFMVHLATIPIPGTGINPARSLGAAVIYN--KDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKA 603
            G AV +VHLATIPI GTGINPARSLG A++      KAW   W+FWVGPF GAA A  YH +ILR  A KA
Sbjct:  199 GLAVLVVHLATIPITGTGINPARSLGPALVLGLGTTKAWSHLWIFWVGPFAGAAAAMIYHHYILRGAAAKA 269          
The following BLAST results are available for this feature:
BLAST of CB304922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
PIP11_VICFA7.030e-2679.69Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH7.030e-2679.69Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP1_SOLLC5.951e-2578.13Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP15_MAIZE1.015e-2476.56Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP2_PEA1.732e-2475.00Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP27_ORYSJ2.954e-2472.86Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP13_ORYSJ3.857e-2475.00Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP11_MAIZE8.593e-2478.13Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
PIP16_MAIZE1.241e-2273.44Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP28_ORYSJ8.323e-1963.38Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_B07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_B07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304922 ID=CB304922; Name=CB304922; organism=Citrus sinensis; type=EST; length=603bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTATTCATCTAATAATTTTTTTTTT
TTCCTTAAAGCACAACAATAATAATAATAATCACATACGGAGAAAATAAT
ACAAAGTAGAAAGAGACAGAAACATTGAAGAAGTGAATTCTAAGGAAAGT
GCTTGAAAACAACAGAGGGGATTACAAAAAAGCAAGCCCCCTCATTGTCT
AAGAGACTTTTTGCCTACAACTCCTTGAAAGCACAAATCACACCCCCCCT
CATTATTCACTTTTTGAAACTTAACACACCTCTACTCCTTCCCAGTTTTT
TCTTTCCAATTTTAAATCATTAACCCCATGAAGATGTGGATAATCCACTT
GTCGAAACTAAAATCAGACACGGGATTGGCTCCTGAATGAACCAAGAGCC
TTGACAGCTCCAGCTCTCAAGATGAATTGGTGGTAGAAAGCCGCAATTGC
TGCACCGATGAAGGGTCCAACCCAGAAGAGCCATTGATCATCCCAAGCCT
TGTCCTTGTTGTAAATAACAGCGGCCCCGAGACTCCTTGCTGGGTTAATG
CCAGTGCCAGGGATTGGGATTGTGGCCAAGTGTACCATGAACACAGCAAA
TCC
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