CB304922

Overview
NameCB304922
Unique NameCB304922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304922_ssr67 microsatellite CB304922_ssr67:67..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7528 contig Csv1_Contig7528:778..1365. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.195e-11
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = -1 
Query:  418 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 603
            GF+V + HL  I   G GINPARS G++VI +    + D W+FWVGPFIGAA+A   + FIL
Sbjct:  176 GFSVALGHLLAIDYTGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALAVLIYDFIL 234
[Close]
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.195e-11
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = -1 
Query:  418 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 603
            GF+V + HL  I   G GINPARS G++VI +    + D W+FWVGPFIGAA+A   + FIL
Sbjct:  175 GFSVALGHLLAIDYTGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALAVLIYDFIL 233
[Close]
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 3.745e-11
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = -1 
Query:  418 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 603
            GF+V + HL  I   G GINPARS G+AVI +    + D W+FWVGPFIG A+A   + FIL
Sbjct:  175 GFSVALGHLLAIDYTGCGINPARSFGSAVITHN---FQDHWVFWVGPFIGGALAVLIYDFIL 233
The following BLAST results are available for this feature:
BLAST of CB304922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
AQP1_SHEEP2.195e-1153.23Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
AQP1_BOVIN2.195e-1153.23Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
AQP1_PIG3.745e-1153.23Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_B07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_B07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304922 ID=CB304922; Name=CB304922; organism=Citrus sinensis; type=EST; length=603bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTATTCATCTAATAATTTTTTTTTT
TTCCTTAAAGCACAACAATAATAATAATAATCACATACGGAGAAAATAAT
ACAAAGTAGAAAGAGACAGAAACATTGAAGAAGTGAATTCTAAGGAAAGT
GCTTGAAAACAACAGAGGGGATTACAAAAAAGCAAGCCCCCTCATTGTCT
AAGAGACTTTTTGCCTACAACTCCTTGAAAGCACAAATCACACCCCCCCT
CATTATTCACTTTTTGAAACTTAACACACCTCTACTCCTTCCCAGTTTTT
TCTTTCCAATTTTAAATCATTAACCCCATGAAGATGTGGATAATCCACTT
GTCGAAACTAAAATCAGACACGGGATTGGCTCCTGAATGAACCAAGAGCC
TTGACAGCTCCAGCTCTCAAGATGAATTGGTGGTAGAAAGCCGCAATTGC
TGCACCGATGAAGGGTCCAACCCAGAAGAGCCATTGATCATCCCAAGCCT
TGTCCTTGTTGTAAATAACAGCGGCCCCGAGACTCCTTGCTGGGTTAATG
CCAGTGCCAGGGATTGGGATTGTGGCCAAGTGTACCATGAACACAGCAAA
TCC
back to top