CB304924

Overview
NameCB304924
Unique NameCB304924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATC_RAT (Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Ctsc PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 3.803e-15
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = -2
Query:  295 PVSVAFEVVDGFRFYKSGVYSSTKCGN--TPMDV-NHAVVAVGYGVED--GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCA 537
            P++VAFEV D F  Y SG+Y  T   +   P ++ NHAV+ VGYG +   G+ YW++KNSWG  WG+ GYF++  G + C I + A
Sbjct:  368 PMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIA 453          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATB_RAT (Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.803e-15
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  307 AEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 576
            +E E+   +    PV  AF V   F  YKSGVY   + G+      HA+  +G+G+E+GVPYWL+ NSW  +WGD+G+FK+  G+N CGI
Sbjct:  235 SEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKH-EAGDVMG--GHAIRILGWGIENGVPYWLVANSWNVDWGDNGFFKILRGENHCGI 321          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATB2_GIALA (Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.803e-15
Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = -2
Query:  307 LQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVED-GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 564
            +  A+    P+ VAF V   F +Y+SGVY  T      M+  HAV  VGYG +D GV YW+IKNSWG +WG+ GYF+M  G N C I
Sbjct:  206 MMKALSTSGPLQVAFLVHSDFMYYESGVYQHTY---GYMEGGHAVEMVGYGTDDDGVDYWIIKNSWGPDWGEDGYFRMIRGINDCSI 289          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CPR1_CAEEL (Gut-specific cysteine proteinase OS=Caenorhabditis elegans GN=cpr-1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.967e-15
Identity = 37/77 (48.05%), Postives = 46/77 (59.74%), Query Frame = -2
Query:  307 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 537
            PV  AF V + F  YKSGVY  T          HA+  +G+G E G PYWL+ NSWG NWG+ G+FK+  G + CGI
Sbjct:  245 PVEAAFSVYEDFYKYKSGVYKHTAGKYLG---GHAIKIIGWGTESGSPYWLVANSWGVNWGESGFFKIYRGDDQCGI 318          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATV_NPVOP (Viral cathepsin OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.967e-15
Identity = 40/114 (35.09%), Postives = 65/114 (57.02%), Query Frame = -2
Query:  307 DGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 648
            +G C+ +     V V       +  E++L+  +  V P+ VA +  D    Y+ G+    +C N  +  NHAV+ VGY VE+ +PYW++KN+WG +WG+ GYF+++   N CGI
Sbjct:  205 NGQCRINPNRFVVGVRSCRRYIVMFEEKLKDLLRAVGPIPVAIDASDIVN-YRRGIMR--QCANHGL--NHAVLLVGYAVENNIPYWILKNTWGTDWGEDGYFRVQQNINACGI 313          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = -2
Query:  307 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 573
            E+ L+  +  V P+++A + VD   +Y  G+ S   C N  +  NHAV+ VGYGVE+ VPYW+IKNSWG ++G+ GY ++  G N CG+
Sbjct:  243 EERLEDLLRYVGPIAIAVDAVDLTDYY-GGIVSF--CENNGL--NHAVLLVGYGVENNVPYWIIKNSWGSDYGEDGYVRVRRGVNSCGM 326          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATB_PONAB (Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = -2
Query:  307 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 537
            PV  AF V   F  YKSGVY         M   HA+  +G+GVE+G PYWL+ NSW  +WGD+G+FK+  G++ CGI
Sbjct:  248 PVEGAFSVYSDFLLYKSGVYQHV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGI 321          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATB_MOUSE (Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = -2
Query:  307 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 537
            PV  AF V   F  YKSGVY   + G+  M   HA+  +G+GVE+GVPYWL  NSW  +WGD+G+FK+  G+N CGI
Sbjct:  248 PVEGAFTVFSDFLTYKSGVYKH-EAGD--MMGGHAIRILGWGVENGVPYWLAANSWNLDWGDNGFFKILRGENHCGI 321          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATB_MACFA (Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = -2
Query:  307 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 537
            PV  AF V   F  YKSGVY         M   HA+  +G+GVE+G PYWL+ NSW  +WGD+G+FK+  G++ CGI
Sbjct:  248 PVEGAFSVYSDFLLYKSGVYQHV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGI 321          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATB_HUMAN (Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = -2
Query:  307 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 537
            PV  AF V   F  YKSGVY         M   HA+  +G+GVE+G PYWL+ NSW  +WGD+G+FK+  G++ CGI
Sbjct:  248 PVEGAFSVYSDFLLYKSGVYQHV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGI 321          
The following BLAST results are available for this feature:
BLAST of CB304924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
CATC_RAT3.803e-1545.35Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Cts... [more]
CATB_RAT3.803e-1544.44Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2[more]
CATB2_GIALA3.803e-1548.28Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=... [more]
CPR1_CAEEL4.967e-1548.05Gut-specific cysteine proteinase OS=Caenorhabditis... [more]
CATV_NPVOP4.967e-1535.09Viral cathepsin OS=Orgyia pseudotsugata multicapsi... [more]
CATV_NPVSE6.487e-1543.82Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
CATB_PONAB6.487e-1548.05Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1[more]
CATB_MOUSE6.487e-1551.95Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2[more]
CATB_MACFA6.487e-1548.05Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV... [more]
CATB_HUMAN6.487e-1548.05Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304924 ID=CB304924; Name=CB304924; organism=Citrus sinensis; type=EST; length=652bp
TTTTTTTTTTTTTTTTTTTTCGCATTGACAAAATATATATAACATCGTTG
GTGTCCTAGTCACAATGACTGTTTACATGGACATAGATCTCAGAATTTAT
TTTGAACATCAAGCAGCCATGCATTGCTATTGTAGATTATATGGACATTA
ATCTCCGAATTTATTTCGTACATAAAGCCAACCATTCTGCTATCACTCTT
AAGTGAAATAATATAAGTTTTATGAGCAAATGACTTGCTGATAGCCAGAT
CCAACTATTTCTTCAGGAGCAGACTAAGCCACAACTGGGTATGATGCACA
AGTTGCAATACCACACATGTTCTTCCCCATCTCCATCTTAAAGTAGCCAT
GATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAATCAGCCAATATGGAACA
CCATCTTCAACTCCGTACCCAACAGCAACGACGGCATGGTTCACATCCAT
GGGAGTATTTCCACATTTAGTGCTGCTGTAAACTCCACTCTTGTAAAATC
GGAATCCATCTACTACTTCAAATGCCACACTCACAGGTCGAACAAGACCA
ACTGCATGCTGTAATTCATCTTCAGCACCCAAGGTAATGTTGACTGAGTC
CAGGACTTGGACGCCAACATTTTCAGATGAGAATTTGCAGACACCATCTT
TT
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