CB304924

Overview
NameCB304924
Unique NameCB304924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATV_NPVAH (Viral cathepsin OS=Adoxophyes honmai nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.472e-15
Identity = 37/113 (32.74%), Postives = 60/113 (53.10%), Query Frame = -2
Query:  307 GVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 645
            GVCK  ++   + V          E+ L+  +  + P+++A +      + K  ++     G     +NHAV+ VGYG E GV YW +KNSWG +WG+ GYF+++   N CG+
Sbjct:  219 GVCKIDNKKFALSVSSCKRYIFQNEENLKKELITMGPIAMAIDAASISTYSKGIIHFCENLG-----LNHAVLLVGYGTEGGVSYWTLKNSWGSDWGEDGYFRVKRNINACGL 326          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: P34_SOYBN (P34 probable thiol protease OS=Glycine max PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.106e-14
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = -2
Query:  286 LVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK----NMCGIATCASYP 546
            L +P+SV+ +  D F  Y  G+Y    C  +P  +NH V+ VGYG  DGV YW+ KNSWG +WG+ GY  ++        +CG+   ASYP
Sbjct:  267 LEQPISVSIDAKD-FHLYTGGIYDGENC-TSPYGINHFVLLVGYGSADGVDYWIAKNSWGFDWGEDGYIWIQRNTGNLLGVCGMNYFASYP 355          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATB_BOVIN (Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5)

HSP 1 Score: 79.7221 bits (195), Expect = 1.445e-14
Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = -2
Query:  307 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 573
            E E+   +    PV  AF V   F  YKSGVY      +  +   HA+  +G+GVE+G PYWL+ NSW  +WGD+G+FK+  G++ CGI
Sbjct:  236 EKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHV---SGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGI 321          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.887e-14
Identity = 41/127 (32.28%), Postives = 73/127 (57.48%), Query Frame = -2
Query:  280 CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVR--PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGV-----PYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 639
            C F+S N+G ++    N T+  ++E   A  +V   P+++A + V+ ++FY  GV+    C   P  ++H ++ VGY  ++ +     PYW++KNSWG +WG+ GY  +  GKN CG++   S  ++
Sbjct:  224 CNFNSANIGAKIS---NFTMIPKNETVMAGYIVSTGPLAIAADAVE-WQFYIGGVFD-IPCN--PNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVSTSII 343          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CPR4_CAEEL (Cathepsin B-like cysteine proteinase 4 OS=Caenorhabditis elegans GN=cpr-4 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.465e-14
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = -2
Query:  307 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVN-HAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 537
            PV  AF V + F  YK+GVY  T    T  ++  HA+  +G+G ++G PYWL+ NSW  NWG++GYF++  G N CGI
Sbjct:  251 PVEAAFTVYEDFYQYKTGVYVHT----TGQELGGHAIRILGWGTDNGTPYWLVANSWNVNWGENGYFRIIRGTNECGI 324          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.219e-14
Identity = 45/127 (35.43%), Postives = 70/127 (55.12%), Query Frame = -2
Query:  280 KDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVR--PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV-EDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 651
            K+  C   ++ V V +  SVN+T   +DE + A  L     +SV    +   +FY+ G+        +   ++HAV+ VGYGV E   P+W++KNSWG  WG++GYF+M  G   CGI T A+  ++
Sbjct:  196 KNEKCHLKTDGVAVYINSSVNLT---QDETELAAWLYHNSTISVGMNALL-LQFYQHGISHPWWIFCSKYLLDHAVLLVGYGVSEKNEPFWIVKNSWGVEWGENGYFRMYRGDGSCGINTVATSAMI 318          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATB_PIG (Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.204e-14
Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = -2
Query:  307 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 573
            E E+   +    PV  AF V   F  YKSGVY         +   HA+  +G+GVE+G PYWL+ NSW  +WGD+G+FK+  G++ CGI
Sbjct:  236 EKEIMAEIYKNGPVEGAFTVYSDFLQYKSGVYQHV---TGDLMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGI 321          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATB3_GIALA (Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.204e-14
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = -2
Query:  307 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVED-GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 537
            P+  AF V   F +Y+SGVY  T      ++  HAV  VGYG +D GV YW+IKNSWG +WG+ GYF++    N CGI
Sbjct:  214 PLQTAFTVYSDFMYYESGVYQHTY---GRVEGGHAVDMVGYGTDDDGVDYWIIKNSWGPDWGEDGYFRIIRMTNECGI 288          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CPR3_CAEEL (Cathepsin B-like cysteine proteinase 3 OS=Caenorhabditis elegans GN=cpr-3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.491e-14
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = -2
Query:  307 ELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 567
            E+Q  +    PV  +++V + F  YKSGVY  T   +  +   HAV  +G+GVE+GV YWLI NSWG ++G+ G+FK+  G N C I
Sbjct:  244 EIQTEIYHYGPVEASYKVYEDFYHYKSGVYHYT---SGKLVGGHAVKIIGWGVENGVDYWLIANSWGTSFGEKGFFKIRRGTNECQI 327          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: BROM1_ANACO (Fruit bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.491e-14
Identity = 40/136 (29.41%), Postives = 69/136 (50.74%), Query Frame = -2
Query:  253 GVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVED-GVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPVVA*SAPEEIV 645
            G C  +S      +     +    E  + +AV   +P++   +  + F++Y  GV+S   CG +   +NHA+  +GYG +  G  YW+++NSWG +WG+ GY +M  G      +CGIA    +P +   A  E++
Sbjct:  215 GTCNANSFPNSAYITGYSYVRRNDERSMMYAVSN-QPIAALIDASENFQYYNGGVFSGP-CGTS---LNHAITIIGYGQDSSGTKYWIVRNSWGSSWGEGGYVRMARGVSSSSGVCGIAMAPLFPTLQSGANAEVI 345          
The following BLAST results are available for this feature:
BLAST of CB304924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
CATV_NPVAH8.472e-1532.74Viral cathepsin OS=Adoxophyes honmai nucleopolyhed... [more]
P34_SOYBN1.106e-1441.76P34 probable thiol protease OS=Glycine max PE=1 SV... [more]
CATB_BOVIN1.445e-1442.70Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5[more]
CYSP1_DICDI1.887e-1432.28Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CPR4_CAEEL2.465e-1446.15Cathepsin B-like cysteine proteinase 4 OS=Caenorha... [more]
CATL_SCHMA3.219e-1435.43Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
CATB_PIG4.204e-1442.70Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1[more]
CATB3_GIALA4.204e-1448.72Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=... [more]
CPR3_CAEEL5.491e-1443.68Cathepsin B-like cysteine proteinase 3 OS=Caenorha... [more]
BROM1_ANACO5.491e-1429.41Fruit bromelain OS=Ananas comosus PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304924 ID=CB304924; Name=CB304924; organism=Citrus sinensis; type=EST; length=652bp
TTTTTTTTTTTTTTTTTTTTCGCATTGACAAAATATATATAACATCGTTG
GTGTCCTAGTCACAATGACTGTTTACATGGACATAGATCTCAGAATTTAT
TTTGAACATCAAGCAGCCATGCATTGCTATTGTAGATTATATGGACATTA
ATCTCCGAATTTATTTCGTACATAAAGCCAACCATTCTGCTATCACTCTT
AAGTGAAATAATATAAGTTTTATGAGCAAATGACTTGCTGATAGCCAGAT
CCAACTATTTCTTCAGGAGCAGACTAAGCCACAACTGGGTATGATGCACA
AGTTGCAATACCACACATGTTCTTCCCCATCTCCATCTTAAAGTAGCCAT
GATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAATCAGCCAATATGGAACA
CCATCTTCAACTCCGTACCCAACAGCAACGACGGCATGGTTCACATCCAT
GGGAGTATTTCCACATTTAGTGCTGCTGTAAACTCCACTCTTGTAAAATC
GGAATCCATCTACTACTTCAAATGCCACACTCACAGGTCGAACAAGACCA
ACTGCATGCTGTAATTCATCTTCAGCACCCAAGGTAATGTTGACTGAGTC
CAGGACTTGGACGCCAACATTTTCAGATGAGAATTTGCAGACACCATCTT
TT
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