CB304924

Overview
NameCB304924
Unique NameCB304924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CYSP_THEAN (Cysteine proteinase OS=Theileria annulata GN=TACP PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 9.367e-14
Identity = 44/125 (35.20%), Postives = 73/125 (58.40%), Query Frame = -2
Query:  280 CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV--EDGVPYWLIKNSWGENWGDHGYFKME---MGKNMCGIATCASYPVV 639
            CK S +N     +DS++I  G  +++ +   ++ P  V   V    + Y  G+++  KCG    ++NHAV+ VG GV  E G+ YW+IKNSWGE+WG++G+ +++    G + CGI T    P++
Sbjct:  322 CKPSIKNK--VFIDSISILKG--NDVVNKSLVISPTVVGIAVTKELKLYSGGIFTG-KCGG---ELNHAVLLVGEGVDHETGMRYWIIKNSWGEDWGENGFLRLQRTKKGLDKCGILTFGLNPIL 438          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CYSP_SCHJA (Cathepsin B-like cysteine proteinase OS=Schistosoma japonicum GN=CATB PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.367e-14
Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = -2
Query:  307 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 573
            E  +Q  + +  PV  AF+V + F  YKSG+Y         +   HA+  +G+GVE   PYWLI NSW E+WG+ G F+M  G++ C I
Sbjct:  246 EKVIQRDIMMYGPVEAAFDVYEDFLNYKSGIYRHV---TGSIVGGHAIRIIGWGVEKRTPYWLIANSWNEDWGEKGLFRMVRGRDECSI 331          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CPR6_CAEEL (Cathepsin B-like cysteine proteinase 6 OS=Caenorhabditis elegans GN=cpr-6 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.367e-14
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = -2
Query:  307 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 537
            P+ +AFEV + F  Y  GVY  T      +   HAV  +G+G++DG+PYW + NSW  +WG+ G+F++  G + CGI
Sbjct:  275 PLEIAFEVYEDFLNYDGGVYVHT---GGKLGGGHAVKLIGWGIDDGIPYWTVANSWNTDWGEDGFFRILRGVDECGI 348          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CPR5_CAEEL (Cathepsin B-like cysteine proteinase 5 OS=Caenorhabditis elegans GN=cpr-5 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = -2
Query:  307 DELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 570
            +++Q  +    P+ VAF V + F  Y +GVY  T   +      HAV  +G+GV++G PYWL+ NSW   WG+ GYF++  G N CGI
Sbjct:  245 EQIQTEILTNGPIEVAFTVYEDFYQYTTGVYVHTAGASLG---GHAVKILGWGVDNGTPYWLVANSWNVAWGEKGYFRIIRGLNECGI 329          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CYSP1_OSTOS (Cathepsin B-like cysteine proteinase 1 OS=Ostertagia ostertagi GN=CP-1 PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.598e-13
Identity = 31/76 (40.79%), Postives = 46/76 (60.53%), Query Frame = -2
Query:  310 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCG 537
            PV   + V + F  Y+SG+Y       T +   HAV  +G+G E G PYW++ NSW ++WG++G+F+M  G N CG
Sbjct:  258 PVVATYTVYEDFAHYRSGIYKHKAGRKTGL---HAVKVIGWGEEKGTPYWIVANSWHDDWGENGFFRMHRGSNDCG 330          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CYSP2_LEIPI (Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = -2
Query:  277 CKFSSENVGVQVLDSVNITLGAEDELQHA-VGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 639
            C  SSE + V      ++ +G+ ++   A +    P+++A +    F  YKSGV   T C      +NH V+ VGY +   VPYW+IKNSWG +WG+ GY ++ MG N C     + YPV A
Sbjct:  226 CSNSSEELVVGAQIDGHVLIGSSEKAMAAWLAKNGPIAIALDA-SSFMSYKSGVL--TAC--IGKQLNHGVLLVGYDMTGEVPYWVIKNSWGGDWGEQGYVRVVMGVNAC---LLSEYPVSA 339          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CYSP_SCHMA (Cathepsin B-like cysteine proteinase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.725e-13
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = -2
Query:  307 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 573
            E  +Q  +    PV  +F V + F  YKSG+Y             HA+  +G+GVE+  PYWLI NSW E+WG++GYF++  G++ C I
Sbjct:  245 EKAIQKEIMKYGPVEASFTVYEDFLNYKSGIYKHITGEALG---GHAIRIIGWGVENKTPYWLIANSWNEDWGENGYFRIVRGRDECSI 330          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: LMCPB_LEIME (Cysteine proteinase B OS=Leishmania mexicana GN=LMCPB PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.071e-13
Identity = 46/122 (37.70%), Postives = 67/122 (54.92%), Query Frame = -2
Query:  277 CKFSSENVGVQVLDSVNITLGAEDELQHA-VGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 639
            C  SSE V    +D  ++ +G+ ++   A +    P+++A +    F  YKSGV   T C      +NH V+ VGY +   VPYW+IKNSWG +WG+ GY ++ MG N C     + YPV A
Sbjct:  226 CSNSSELVVGAQIDG-HVLIGSSEKAMAAWLAKNGPIAIALDA-SSFMSYKSGVL--TAC--IGKQLNHGVLLVGYDMTGEVPYWVIKNSWGGDWGEQGYVRVVMGVNAC---LLSEYPVSA 338          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CYSP3_OSTOS (Cathepsin B-like cysteine proteinase 3 (Fragment) OS=Ostertagia ostertagi GN=CP-3 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.071e-13
Identity = 35/77 (45.45%), Postives = 45/77 (58.44%), Query Frame = -2
Query:  307 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 537
            PV   F V + F  YKSG+Y  T      M   HAV  +G+G E G PYWLI NSW ++WG+ G+++M  G N C I
Sbjct:   92 PVVAGFIVYEDFAHYKSGIYKHTA---GRMTGGHAVKIIGWGKEKGTPYWLIANSWHDDWGEKGFYRMIRGINNCRI 165          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CPGP1_ZINOF (Zingipain-1 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.071e-13
Identity = 45/128 (35.16%), Postives = 66/128 (51.56%), Query Frame = -2
Query:  283 DGVCKFSSENVGVQVLDSV-NITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEM----GKNMCGIATCASYPV 648
            +G C  + EN  V  +DS  N+    E  LQ AV   +PVSV  +     F+ Y++G+++    G+  +  NH     G   E+   YW +KNSWG+NWG+ GY ++E         CGIA   SYP+
Sbjct:   95 NGTCD-TKENAHVVSIDSYRNVPSNDEKSLQKAVAN-QPVSVTMDAAGRDFQLYRNGIFT----GSCNISANHYRTVGGRETENDKDYWTVKNSWGKNWGESGYIRVERNIAESSGKCGIAISPSYPI 216          
The following BLAST results are available for this feature:
BLAST of CB304924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
CYSP_THEAN9.367e-1435.20Cysteine proteinase OS=Theileria annulata GN=TACP ... [more]
CYSP_SCHJA9.367e-1440.45Cathepsin B-like cysteine proteinase OS=Schistosom... [more]
CPR6_CAEEL9.367e-1441.56Cathepsin B-like cysteine proteinase 6 OS=Caenorha... [more]
CPR5_CAEEL1.223e-1340.91Cathepsin B-like cysteine proteinase 5 OS=Caenorha... [more]
CYSP1_OSTOS1.598e-1340.79Cathepsin B-like cysteine proteinase 1 OS=Ostertag... [more]
CYSP2_LEIPI2.087e-1336.89Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS... [more]
CYSP_SCHMA2.725e-1339.33Cathepsin B-like cysteine proteinase OS=Schistosom... [more]
LMCPB_LEIME6.071e-1337.70Cysteine proteinase B OS=Leishmania mexicana GN=LM... [more]
CYSP3_OSTOS6.071e-1345.45Cathepsin B-like cysteine proteinase 3 (Fragment) ... [more]
CPGP1_ZINOF6.071e-1335.16Zingipain-1 OS=Zingiber officinale PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304924 ID=CB304924; Name=CB304924; organism=Citrus sinensis; type=EST; length=652bp
TTTTTTTTTTTTTTTTTTTTCGCATTGACAAAATATATATAACATCGTTG
GTGTCCTAGTCACAATGACTGTTTACATGGACATAGATCTCAGAATTTAT
TTTGAACATCAAGCAGCCATGCATTGCTATTGTAGATTATATGGACATTA
ATCTCCGAATTTATTTCGTACATAAAGCCAACCATTCTGCTATCACTCTT
AAGTGAAATAATATAAGTTTTATGAGCAAATGACTTGCTGATAGCCAGAT
CCAACTATTTCTTCAGGAGCAGACTAAGCCACAACTGGGTATGATGCACA
AGTTGCAATACCACACATGTTCTTCCCCATCTCCATCTTAAAGTAGCCAT
GATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAATCAGCCAATATGGAACA
CCATCTTCAACTCCGTACCCAACAGCAACGACGGCATGGTTCACATCCAT
GGGAGTATTTCCACATTTAGTGCTGCTGTAAACTCCACTCTTGTAAAATC
GGAATCCATCTACTACTTCAAATGCCACACTCACAGGTCGAACAAGACCA
ACTGCATGCTGTAATTCATCTTCAGCACCCAAGGTAATGTTGACTGAGTC
CAGGACTTGGACGCCAACATTTTCAGATGAGAATTTGCAGACACCATCTT
TT
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