CB304924

Overview
NameCB304924
Unique NameCB304924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATV_NPVBS (Viral cathepsin OS=Buzura suppressaria nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.071e-13
Identity = 38/112 (33.93%), Postives = 62/112 (55.36%), Query Frame = -2
Query:  307 CKFSSENVGV-QVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 639
            C+   +  GV +V       +  E++L+  +  V P+ +A +   G   Y  G+     C N    +NHAV+ VGYGVE+ VP+W  KN+WG++WG+ GYF++    + CG+
Sbjct:  211 CELRGDETGVVKVKGCYRYVVFREEKLKDLLRAVGPIPMAIDA-SGIVNYHHGIIHY--CEN--YGLNHAVLLVGYGVENNVPFWTFKNTWGKDWGEEGYFRVRQNVDACGM 317          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CYSP2_HAECO (Cathepsin B-like cysteine proteinase 2 OS=Haemonchus contortus GN=AC-2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.929e-13
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = -2
Query:  307 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 537
            PV  +F V + FR YKSG+Y  T      +   HAV  +G+G E+   +WLI NSW  +WG+ GYF++  G N CGI
Sbjct:  255 PVVASFAVYEDFRHYKSGIYKHTA---GELRGYHAVKMIGWGNENNTDFWLIANSWHNDWGEKGYFRIVRGSNDCGI 328          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATB_CHICK (Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.929e-13
Identity = 37/90 (41.11%), Postives = 50/90 (55.56%), Query Frame = -2
Query:  307 AEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 576
            +E E+   +    PV  AF V + F  YKSGVY             HA+  +G+GVE+G PYWL  NSW  +WG  G+FK+  G++ CGI
Sbjct:  236 SEKEIMAEIYKNGPVEGAFIVYEDFLMYKSGVYQHVSGEQVG---GHAIRILGWGVENGTPYWLAANSWNTDWGITGFFKILRGEDHCGI 322          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.036e-12
Identity = 44/130 (33.85%), Postives = 66/130 (50.77%), Query Frame = -2
Query:  292 DGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGF-RFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVP-------YWLIKNSWGENWGDHGYFKMEMG---KNMCGIATCAS 648
            DG CKF    +   V    N ++ + DE Q +  L++   +A  +   + + Y  GV     CG     ++H V+ VGYG     P       YW+IKNSWGENWG++GY+K+  G   +N CG+ +  S
Sbjct:  238 DGKCKFDKSKIVASVQ---NFSVVSVDEAQISANLIKHGPLAIGINAAYMQTYIGGVSCPYICGR---HLDHGVLLVGYGASGFAPIRLKDKPYWIIKNSWGENWGENGYYKICRGSNVRNKCGVDSMVS 361          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CYSP1_HAECO (Cathepsin B-like cysteine proteinase 1 OS=Haemonchus contortus GN=AC-1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.353e-12
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = -2
Query:  307 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 537
            PV  +F V + FR YKSG+Y  T      +   HAV  +G+G E+   +WLI NSW  +WG+ GYF++  G N CGI
Sbjct:  255 PVVASFAVYEDFRHYKSGIYKHTA---GELRGYHAVKMIGWGNENNTDFWLIANSWHNDWGEKGYFRIIRGTNDCGI 328          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: XCP2_ARATH (Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.766e-12
Identity = 43/128 (33.59%), Postives = 69/128 (53.91%), Query Frame = -2
Query:  286 KDGVCKFSS-ENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYP 651
            ++G C+    E+  V +    ++    E  L  A+   +P+SVA +     F+FY  GV+   +CG   +D++H V AVGYG   G  Y ++KNSWG  WG+ GY +++      + +CGI   AS+P
Sbjct:  230 EEGTCEMQKDESETVTINGHQDVPTNDEKSLLKALAH-QPLSVAIDASGREFQFYSGGVFDG-RCG---VDLDHGVAAVGYGSSKGSDYIIVKNSWGPKWGEKGYIRLKRNTGKPEGLCGINKMASFP 352          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CYSP_TRYBB (Cysteine proteinase OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.766e-12
Identity = 38/125 (30.40%), Postives = 61/125 (48.80%), Query Frame = -2
Query:  265 CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA*SAP 639
            C+ +   +G  + D V++    ED +   +    P+++A +  + F  Y  G+ +S     T   ++H V+ VGY      PYW+IKNSW   WG+ GY ++E G N C +    S  VV    P
Sbjct:  226 CQMNGHEIGAAITDHVDLPQD-EDAIAAYLAENGPLAIAVDA-ESFMDYNGGILTSC----TSKQLDHGVLLVGYNDNSNPPYWIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSSAVVGGPTP 344          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.307e-12
Identity = 45/129 (34.88%), Postives = 66/129 (51.16%), Query Frame = -2
Query:  292 KDG-VCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGF-RFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVP-------YWLIKNSWGENWGDHGYFKMEMGKNMCGIATCAS 651
            KDG  CK     +   V    N ++ + DE Q A  LV+   +A  +  G+ + Y  GV     C      +NH V+ VGYG     P       YW+IKNSWGE WG++G++K+  G+N+CG+ +  S
Sbjct:  235 KDGKTCKLDKSKIVASVS---NFSVISIDEEQIAANLVKNGPLAVAINAGYMQTYIGGVSCPYICTRR---LNHGVLLVGYGAAGYAPARFKEKPYWIIKNSWGETWGENGFYKICKGRNICGVDSMVS 357          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CYSP_TRYCR (Cruzipain OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.140e-12
Identity = 46/127 (36.22%), Postives = 61/127 (48.03%), Query Frame = -2
Query:  265 CKFSSENVGVQVLDSVNITLGAEDELQHAVGLV--RPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA*SAP 639
            C  S   VG  +   V +    +DE Q A  L    PV+VA +    +  Y  GV +S  C +  +D  H V+ VGY     VPYW+IKNSW   WG+ GY ++  G N C +   AS  VV    P
Sbjct:  223 CTTSGHTVGATITGHVELP---QDEAQIAAWLAVNGPVAVAVDA-SSWMTYTGGVMTS--CVSEQLD--HGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVVGGPGP 341          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: ANAN_ANACO (Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.140e-12
Identity = 39/136 (28.68%), Postives = 66/136 (48.53%), Query Frame = -2
Query:  253 GVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVED-GVPYWLIKNSWGENWGDHGYFKM----EMGKNMCGIATCASYPVVA*SAPEEIV 645
            G CK +       +     +    E  + +AV   +P++ A +    F+ YK GV++   CG     +NHA+V +GYG +  G  +W+++NSWG  WG+ GY ++         +CGIA    YP +      E++
Sbjct:  215 GTCKTNGVPNSAYITRYTYVQRNNERNMMYAVSN-QPIAAALDASGNFQHYKRGVFTGP-CGTR---LNHAIVIIGYGQDSSGKKFWIVRNSWGAGWGEGGYIRLARDVSSSFGLCGIAMDPLYPTLQSGPSVEVI 345          
The following BLAST results are available for this feature:
BLAST of CB304924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
CATV_NPVBS6.071e-1333.93Viral cathepsin OS=Buzura suppressaria nuclear pol... [more]
CYSP2_HAECO7.929e-1344.16Cathepsin B-like cysteine proteinase 2 OS=Haemonch... [more]
CATB_CHICK7.929e-1341.11Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1[more]
CYSP1_MAIZE1.036e-1233.85Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
CYSP1_HAECO1.353e-1244.16Cathepsin B-like cysteine proteinase 1 OS=Haemonch... [more]
XCP2_ARATH1.766e-1233.59Xylem cysteine proteinase 2 OS=Arabidopsis thalian... [more]
CYSP_TRYBB1.766e-1230.40Cysteine proteinase OS=Trypanosoma brucei brucei P... [more]
RD19A_ARATH2.307e-1234.88Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
CYSP_TRYCR5.140e-1236.22Cruzipain OS=Trypanosoma cruzi PE=1 SV=1[more]
ANAN_ANACO5.140e-1228.68Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304924 ID=CB304924; Name=CB304924; organism=Citrus sinensis; type=EST; length=652bp
TTTTTTTTTTTTTTTTTTTTCGCATTGACAAAATATATATAACATCGTTG
GTGTCCTAGTCACAATGACTGTTTACATGGACATAGATCTCAGAATTTAT
TTTGAACATCAAGCAGCCATGCATTGCTATTGTAGATTATATGGACATTA
ATCTCCGAATTTATTTCGTACATAAAGCCAACCATTCTGCTATCACTCTT
AAGTGAAATAATATAAGTTTTATGAGCAAATGACTTGCTGATAGCCAGAT
CCAACTATTTCTTCAGGAGCAGACTAAGCCACAACTGGGTATGATGCACA
AGTTGCAATACCACACATGTTCTTCCCCATCTCCATCTTAAAGTAGCCAT
GATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAATCAGCCAATATGGAACA
CCATCTTCAACTCCGTACCCAACAGCAACGACGGCATGGTTCACATCCAT
GGGAGTATTTCCACATTTAGTGCTGCTGTAAACTCCACTCTTGTAAAATC
GGAATCCATCTACTACTTCAAATGCCACACTCACAGGTCGAACAAGACCA
ACTGCATGCTGTAATTCATCTTCAGCACCCAAGGTAATGTTGACTGAGTC
CAGGACTTGGACGCCAACATTTTCAGATGAGAATTTGCAGACACCATCTT
TT
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