CB304924

Overview
NameCB304924
Unique NameCB304924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: PAPA2_CARPA (Chymopapain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = -2
Query:  286 RPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEM----GKNMCGIATCASYP 540
            +P+SV  E     F+ YKSGV+    CG     ++HAV AVGYG  DG  Y +IKNSWG NWG+ GY +++      +  CG+   + YP
Sbjct:  262 QPLSVLVEAGGKPFQLYKSGVFDGP-CGTK---LDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYP 347          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATO_MOUSE (Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 41/117 (35.04%), Postives = 62/117 (52.99%), Query Frame = -2
Query:  304 DGVCK-FSSENVGVQVLD-SVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIA 648
            +G C+ F     GV V D S     G EDE+  A+    P+ V  + +  ++ Y  G+     C +   + NHAV+  G+      PYW+++NSWG +WG  GY  ++MG N+CGIA
Sbjct:  192 NGQCRHFPQSQAGVSVKDFSAYNFRGQEDEMARALLSFGPLVVIVDAMS-WQDYLGGIIQH-HCSSG--EANHAVLITGFDRTGNTPYWMVRNSWGSSWGVEGYAHVKMGGNVCGIA 304          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: MEX1_JACME (Mexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.767e-12
Identity = 46/129 (35.66%), Postives = 69/129 (53.49%), Query Frame = -2
Query:  283 KDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLV-RPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKME----MGKNMCGIATCASYPV 651
            K G C+ + +  G +V  +    + A DE+     +  +PVSV  +    GF+FYK G+Y    CG    + +HAV AVGYG      Y L+KNSWG NWG+ GY +++      K  CG+ T + +P+
Sbjct:   91 KQGRCR-AKDKKGPKVYITGYKYVPANDEISLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGP-CGT---NTDHAVTAVGYGKT----YLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPI 210          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: PAPA1_CARPA (Papain OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.551e-11
Identity = 39/91 (42.86%), Postives = 53/91 (58.24%), Query Frame = -2
Query:  283 RPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK----NMCGIATCASYPV 540
            +PVSV  E     F+ Y+ G++    CGN    V+HAV AVGYG      Y LIKNSWG  WG++GY +++ G      +CG+ T + YPV
Sbjct:  261 QPVSVVLEAAGKDFQLYRGGIFVGP-CGNK---VDHAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 343          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATW_MOUSE (Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.551e-11
Identity = 36/116 (31.03%), Postives = 59/116 (50.86%), Query Frame = -2
Query:  277 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE-DGV----------------PYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 573
            E  + H + +  P++V   +    + Y+ GV  +T     P  V+H+V+ VG+G + +G+                PYW++KNSWG +WG+ GYF++  G N CG+     YP  A
Sbjct:  245 EQAIAHYLAVHGPITVTINM-KLLQHYQKGVIKATPSSCDPRQVDHSVLLVGFGKKKEGMQTGTVLSHSRKRRHSSPYWILKNSWGAHWGEKGYFRLYRGNNTCGV---TKYPFTA 356          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: PAPA4_CARPA (Papaya proteinase 4 OS=Carica papaya PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = -2
Query:  283 RPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK----NMCGIATCASYPV 540
            +PVSV  E     F+ YK G++  + CG     V+HAV AVGYG   G  Y LIKNSWG  WG++GY ++         +CG+   + YP+
Sbjct:  260 QPVSVVVESAGRDFQNYKGGIFEGS-CGTK---VDHAVTAVGYGKSGGKGYILIKNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYPI 346          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATB1_GIALA (Cathepsin B-like CP1 OS=Giardia lamblia GN=CP1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = -2
Query:  307 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV-EDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 537
            P+     V     +Y+SGVY  T  G   +   HA+  VGYG  +DG  YW+IKNSWG +WG++GYF++  G N C I
Sbjct:  218 PLQTMIVVYADLSYYESGVYKHTY-GTINLGF-HALEIVGYGTTDDGTDYWIIKNSWGPDWGENGYFRIVRGVNECRI 293          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 42/127 (33.07%), Postives = 65/127 (51.18%), Query Frame = -2
Query:  292 GVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVR--PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVED-------GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCAS 645
            G CK     +   V    N ++ + +E Q A  L++  P++VA       + Y  GV     C      +NH V+ VGYG            PYW+IKNSWGE+WG++G++K+  G+N+CG+ +  S
Sbjct:  235 GSCKLDRSKIVASVS---NFSVVSINEDQIAANLIKNGPLAVAINAAY-MQTYIGGVSCPYICSRR---LNHGVLLVGYGSAGFSQARLKEKPYWIIKNSWGESWGENGFYKICKGRNICGVDSLVS 354          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATO_HUMAN (Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = -2
Query:  292 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCAS 573
            EDE+  A+    P+ V  + V  ++ Y  G+     C +   + NHAV+  G+      PYW+++NSWG +WG  GY  ++MG N+CGIA   S
Sbjct:  228 EDEMAKALLTFGPLVVIVDAVS-WQDYLGGIIQH-HCSSG--EANHAVLITGFDKTGSTPYWIVRNSWGSSWGVDGYAHVKMGSNVCGIADSVS 317          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATW_FELCA (Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 33/93 (35.48%), Postives = 46/93 (49.46%), Query Frame = -2
Query:  277 RFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGV------------------PYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 501
            + YK GV  +T     P  V+H+V+ VG+G  + V                  P+W++KNSWG  WG  GYF++  G N CGI     YP+ A
Sbjct:  270 KLYKKGVIEATPTSCDPFLVDHSVLLVGFGKSESVADRRAGAAGAQPQSRRSIPFWILKNSWGTKWGXGGYFRLYRGNNTCGI---TKYPLTA 359          
The following BLAST results are available for this feature:
BLAST of CB304924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
PAPA2_CARPA6.712e-1242.22Chymopapain OS=Carica papaya PE=1 SV=2[more]
CATO_MOUSE6.712e-1235.04Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1[more]
MEX1_JACME8.767e-1235.66Mexicain OS=Jacaratia mexicana PE=1 SV=1[more]
PAPA1_CARPA2.551e-1142.86Papain OS=Carica papaya PE=1 SV=1[more]
CATW_MOUSE2.551e-1131.03Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1[more]
PAPA4_CARPA3.331e-1140.66Papaya proteinase 4 OS=Carica papaya PE=1 SV=3[more]
CATB1_GIALA4.351e-1143.59Cathepsin B-like CP1 OS=Giardia lamblia GN=CP1 PE=... [more]
A494_ARATH4.351e-1133.07Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
CATO_HUMAN5.682e-1136.17Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1[more]
CATW_FELCA7.422e-1135.48Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304924 ID=CB304924; Name=CB304924; organism=Citrus sinensis; type=EST; length=652bp
TTTTTTTTTTTTTTTTTTTTCGCATTGACAAAATATATATAACATCGTTG
GTGTCCTAGTCACAATGACTGTTTACATGGACATAGATCTCAGAATTTAT
TTTGAACATCAAGCAGCCATGCATTGCTATTGTAGATTATATGGACATTA
ATCTCCGAATTTATTTCGTACATAAAGCCAACCATTCTGCTATCACTCTT
AAGTGAAATAATATAAGTTTTATGAGCAAATGACTTGCTGATAGCCAGAT
CCAACTATTTCTTCAGGAGCAGACTAAGCCACAACTGGGTATGATGCACA
AGTTGCAATACCACACATGTTCTTCCCCATCTCCATCTTAAAGTAGCCAT
GATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAATCAGCCAATATGGAACA
CCATCTTCAACTCCGTACCCAACAGCAACGACGGCATGGTTCACATCCAT
GGGAGTATTTCCACATTTAGTGCTGCTGTAAACTCCACTCTTGTAAAATC
GGAATCCATCTACTACTTCAAATGCCACACTCACAGGTCGAACAAGACCA
ACTGCATGCTGTAATTCATCTTCAGCACCCAAGGTAATGTTGACTGAGTC
CAGGACTTGGACGCCAACATTTTCAGATGAGAATTTGCAGACACCATCTT
TT
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