CB304924

Overview
NameCB304924
Unique NameCB304924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13130 contig Csv1_Contig13130:861..1512. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: PAPA5_CARPA (Cysteine proteinase (Fragment) OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = -2
Query:  292 VNHAVVAVGYGVEDGVP-------YWLIKNSWGENWGDHGYFKMEMGKNMCGIATCAS 444
            +NH V+ VGYG     P       YW+IKNSWGENWG++GY+K+  G+N+CG+ +  S
Sbjct:   29 LNHGVLLVGYGSAGYAPIRLKEKPYWVIKNSWGENWGENGYYKICRGRNICGVDSMVS 86          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: ERVC_TABDI (Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 45/126 (35.71%), Postives = 64/126 (50.79%), Query Frame = -2
Query:  277 GVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEM--GKNMCGIATCASYPVVA 645
            G C+ +S+ V +   + V      E  L+ AV  V+P +VA +     F+ Y SG++S   CG     +NH V  VGY       YW+++NSWG  WG+ GY +M    G  +CGIA    YP  A
Sbjct:   94 GPCQAASKVVSIDGYNGVPFC--NEXALKQAVA-VQPSTVAIDASSAQFQQYSSGIFSGP-CGTK---LNHGVTIVGYQAN----YWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPTKA 208          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATL2_PARTE (Cathepsin L 2 OS=Paramecium tetraurelia GN=GSPATT00022898001 PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 46/124 (37.10%), Postives = 68/124 (54.84%), Query Frame = -2
Query:  280 KDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 651
            KDG CK S +     V    +I   + DEL  A+   R VSVA +  + ++FY+SGV S  KC     ++NH VV VG   +     W I+NSWG +WG+ G+ ++  G + CGI    S+P++
Sbjct:  203 KDGTCKTSVKRPYTHVQGFTDID--SCDELAQAIQ-ERTVSVAVDA-NPWQFYRSGVLS--KCTK---NLNHGVVLVGVQADGA---WKIRNSWGSSWGEAGHIRL-AGGDTCGICAAPSFPIL 313          
The following BLAST results are available for this feature:
BLAST of CB304924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
PAPA5_CARPA9.693e-1148.28Cysteine proteinase (Fragment) OS=Carica papaya PE... [more]
ERVC_TABDI9.693e-1135.71Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=... [more]
CATL2_PARTE9.693e-1137.10Cathepsin L 2 OS=Paramecium tetraurelia GN=GSPATT0... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304924 ID=CB304924; Name=CB304924; organism=Citrus sinensis; type=EST; length=652bp
TTTTTTTTTTTTTTTTTTTTCGCATTGACAAAATATATATAACATCGTTG
GTGTCCTAGTCACAATGACTGTTTACATGGACATAGATCTCAGAATTTAT
TTTGAACATCAAGCAGCCATGCATTGCTATTGTAGATTATATGGACATTA
ATCTCCGAATTTATTTCGTACATAAAGCCAACCATTCTGCTATCACTCTT
AAGTGAAATAATATAAGTTTTATGAGCAAATGACTTGCTGATAGCCAGAT
CCAACTATTTCTTCAGGAGCAGACTAAGCCACAACTGGGTATGATGCACA
AGTTGCAATACCACACATGTTCTTCCCCATCTCCATCTTAAAGTAGCCAT
GATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAATCAGCCAATATGGAACA
CCATCTTCAACTCCGTACCCAACAGCAACGACGGCATGGTTCACATCCAT
GGGAGTATTTCCACATTTAGTGCTGCTGTAAACTCCACTCTTGTAAAATC
GGAATCCATCTACTACTTCAAATGCCACACTCACAGGTCGAACAAGACCA
ACTGCATGCTGTAATTCATCTTCAGCACCCAAGGTAATGTTGACTGAGTC
CAGGACTTGGACGCCAACATTTTCAGATGAGAATTTGCAGACACCATCTT
TT
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