CB304924

Overview
NameCB304924
Unique NameCB304924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATK_MACFA (Cathepsin K OS=Macaca fascicularis GN=CTSK PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.551e-21
Identity = 51/100 (51.00%), Postives = 65/100 (65.00%), Query Frame = -2
Query:  286 GAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYP 579
            G E  L+ AV  V PVSVA +  +  F+FY  GVY    C +   ++NHAV+AVGYG++ G  +W+IKNSWGENWG+ GY  M   K N CGIA  AS+P
Sbjct:  230 GNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD--NLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFP 327          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATK_HUMAN (Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.551e-21
Identity = 51/100 (51.00%), Postives = 65/100 (65.00%), Query Frame = -2
Query:  286 GAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYP 579
            G E  L+ AV  V PVSVA +  +  F+FY  GVY    C +   ++NHAV+AVGYG++ G  +W+IKNSWGENWG+ GY  M   K N CGIA  AS+P
Sbjct:  230 GNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD--NLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFP 327          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATL2_HUMAN (Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.057e-21
Identity = 56/129 (43.41%), Postives = 70/129 (54.26%), Query Frame = -2
Query:  280 DGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 648
            D +CK+  EN          +  G E  L  AV  V P+SVA +     F+FYKSG+Y    C +  +D  H V+ VGYG E    +   YWL+KNSWG  WG +GY K+   K N CGIAT ASYP V
Sbjct:  208 DEICKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLD--HGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 334          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CYSP3_DICDI (Cysteine proteinase 3 OS=Dictyostelium discoideum GN=cprC PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.762e-20
Identity = 51/121 (42.15%), Postives = 76/121 (62.81%), Query Frame = -2
Query:  283 CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPV 639
            CKF   +V  ++     I  G E++LQ+A+ L+ PVSVA +   + F+ Y +GVY    C +   D++H V+AVG G ++G  Y+++KNSWG +WG +GY  M   K N CGI+T ASYP+
Sbjct:  219 CKFQEGSVAAKITSYKEIEAGDENDLQNAL-LLNPVSVAIDASHNSFQLYTAGVYYEPACSSE--DLDHGVLAVGMGTDNGEDYYIVKNSWGPSWGLNGYIHMARNKDNNCGISTMASYPI 336          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATK_RAT (Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.697e-20
Identity = 51/124 (41.13%), Postives = 70/124 (56.45%), Query Frame = -2
Query:  286 KDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYP 651
            +D  C +++     +      I +G E  L+ AV  V PVSV+ +  +  F+FY  GVY    C     +VNHAV+ VGYG + G  YW+IKNSWGE+WG+ GY  +   K N CGI   AS+P
Sbjct:  206 QDESCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPVSVSIDASLTSFQFYSRGVYYDENCDRD--NVNHAVLVVGYGTQKGNKYWIIKNSWGESWGNKGYVLLARNKNNACGITNLASFP 327          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATS_CANFA (Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.746e-20
Identity = 52/125 (41.60%), Postives = 69/125 (55.20%), Query Frame = -2
Query:  280 DGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 648
            +G C++ S+           +  G+ED L+ AV    PVSVA +     F  Y+SGVY    C     +VNH V+ VGYG  +G  YWL+KNSWG N+GD GY +M     N CGIA+  SYP +
Sbjct:  210 NGKCRYDSKKRAATCSKYTELPFGSEDALKEAVANKGPVSVAIDASHYSFFLYRSGVYYEPSC---TQNVNHGVLVVGYGNLNGKDYWLVKNSWGLNFGDQGYIRMARNSGNHCGIASYPSYPEI 331          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.142e-19
Identity = 57/134 (42.54%), Postives = 78/134 (58.21%), Query Frame = -2
Query:  265 DGVCKFSSENVGVQVLDSV-NITLGAEDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNM----CGIATCASYPVVA*SAP 648
            DG C  + EN  V  +D   ++    E  LQ AV   +PVSVA E     F+ Y SGV+S  +CG +   ++H VVAVGYG ++G  YW+++NSWG  WG+ GY +ME   N+    CGIA  ASYP  + + P
Sbjct:  235 DGKCDINRENAKVVSIDGFEDVPQNDEKSLQKAVAH-QPVSVAIEAGGREFQLYHSGVFSG-RCGTS---LDHGVVAVGYGTDNGKDYWIVRNSWGPKWGESGYVRMERNINVTTGKCGIAMMASYPTKSGANP 363          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CRUST_PANBO (Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.492e-19
Identity = 55/126 (43.65%), Postives = 68/126 (53.97%), Query Frame = -2
Query:  280 DGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE-DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 648
            D  C++ + N+G  V   V    G E  LQHAV    PVSV  +     F  Y  GVY    C +     NHAV AVGYG + +G  YW++KNSWG  WG+ GY KM   + N C IAT + YPVV
Sbjct:  200 DDNCRYDAGNIGATVSSYVEPASGDESALQHAVQNEGPVSVCIDAGQSSFGSYGGGVYYEPNCDS--WYANHAVTAVGYGTDANGGDYWIVKNSWGAWWGESGYIKMARNRDNNCAIATYSVYPVV 323          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATS_BOVIN (Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.492e-19
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = -2
Query:  280 DGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 648
            DG C++  +N        + +  G+E+ L+ AV    PVSV  +     F  YK+GVY    C     +VNH V+ VGYG  DG  YWL+KNSWG ++GD GY +M     N CGIA   SYP +
Sbjct:  210 DGKCQYDVKNRAATCSRYIELPFGSEEALKEAVANKGPVSVGIDASHSSFFLYKTGVYYDPSC---TQNVNHGVLVVGYGNLDGKDYWLVKNSWGLHFGDQGYIRMARNSGNHCGIANYPSYPEI 331          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CYSP5_DICDI (Cysteine proteinase 5 OS=Dictyostelium discoideum GN=cprE PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.545e-19
Identity = 55/145 (37.93%), Postives = 76/145 (52.41%), Query Frame = -2
Query:  280 KDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVP-------------------YWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 651
            ++G C++ SEN G  +     +T G+E  L+ AV  V PVSVA +     F+ Y SG+Y   +C +  +D  H V+AVGYG   G                     YW++KNSWG +WG  GY  M   + N CGIA+ AS+PVV
Sbjct:  203 ENGKCEYKSENSGATLSSYKTVTAGSESSLESAVN-VNPVSVAIDASHQSFQLYTSGIYYEPECSSENLD--HGVLAVGYGSGSGSSSGQSSGQSSGNLSASSSNEYWIVKNSWGTSWGIEGYILMSRNRDNNCGIASSASFPVV 344          
The following BLAST results are available for this feature:
BLAST of CB304924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
CATK_MACFA3.551e-2151.00Cathepsin K OS=Macaca fascicularis GN=CTSK PE=2 SV... [more]
CATK_HUMAN3.551e-2151.00Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1[more]
CATL2_HUMAN6.057e-2143.41Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2[more]
CYSP3_DICDI1.762e-2042.15Cysteine proteinase 3 OS=Dictyostelium discoideum ... [more]
CATK_RAT6.697e-2041.13Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1[more]
CATS_CANFA8.746e-2041.60Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1[more]
ORYB_ORYSJ1.142e-1942.54Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CRUST_PANBO1.492e-1943.65Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1[more]
CATS_BOVIN1.492e-1940.80Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2[more]
CYSP5_DICDI2.545e-1937.93Cysteine proteinase 5 OS=Dictyostelium discoideum ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304924 ID=CB304924; Name=CB304924; organism=Citrus sinensis; type=EST; length=652bp
TTTTTTTTTTTTTTTTTTTTCGCATTGACAAAATATATATAACATCGTTG
GTGTCCTAGTCACAATGACTGTTTACATGGACATAGATCTCAGAATTTAT
TTTGAACATCAAGCAGCCATGCATTGCTATTGTAGATTATATGGACATTA
ATCTCCGAATTTATTTCGTACATAAAGCCAACCATTCTGCTATCACTCTT
AAGTGAAATAATATAAGTTTTATGAGCAAATGACTTGCTGATAGCCAGAT
CCAACTATTTCTTCAGGAGCAGACTAAGCCACAACTGGGTATGATGCACA
AGTTGCAATACCACACATGTTCTTCCCCATCTCCATCTTAAAGTAGCCAT
GATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAATCAGCCAATATGGAACA
CCATCTTCAACTCCGTACCCAACAGCAACGACGGCATGGTTCACATCCAT
GGGAGTATTTCCACATTTAGTGCTGCTGTAAACTCCACTCTTGTAAAATC
GGAATCCATCTACTACTTCAAATGCCACACTCACAGGTCGAACAAGACCA
ACTGCATGCTGTAATTCATCTTCAGCACCCAAGGTAATGTTGACTGAGTC
CAGGACTTGGACGCCAACATTTTCAGATGAGAATTTGCAGACACCATCTT
TT
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