CB304924

Overview
NameCB304924
Unique NameCB304924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13130 contig Csv1_Contig13130:861..1512. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.324e-19
Identity = 54/129 (41.86%), Postives = 76/129 (58.91%), Query Frame = -2
Query:  283 KDGVCKFSSENVGVQVLDSV-NITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKME----MGKNMCGIATCASYPV 651
            KD  C  + +N  V  +DS  ++T  +E  LQ AV   +PVSVA E     F+ Y SG+++  KCG     ++H V AVGYG E+G  YW+++NSWG++WG+ GY +ME         CGIA   SYP+
Sbjct:  221 KDERCDVNRKNAKVVTIDSYEDVTPNSETSLQKAVAN-QPVSVAIEAGGRAFQLYSSGIFTG-KCGTA---LDHGVAAVGYGTENGKDYWIVRNSWGKSWGESGYVRMERNIKASSGKCGIAVEPSYPL 344          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATL1_CERAE (Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.341e-19
Identity = 56/126 (44.44%), Postives = 68/126 (53.97%), Query Frame = -2
Query:  280 CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 639
            CK++ E         V+I    E  L  AV  V P+SVA +   + F FYK G+Y    C +  MD  H V+ VGYG E    D   YWL+KNSWGE WG  GY KM    +N CGIA+ ASYP V
Sbjct:  211 CKYNPEYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFMFYKEGIYFEPDCSSEDMD--HGVLVVGYGFESTESDNSKYWLVKNSWGEEWGMGGYIKMAKDRRNHCGIASAASYPTV 333          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATK_MOUSE (Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.341e-19
Identity = 49/124 (39.52%), Postives = 70/124 (56.45%), Query Frame = -2
Query:  286 KDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYP 651
            +D  C +++     +      I +G E  L+ AV  V P+SV+ +  +  F+FY  GVY    C     +VNHAV+ VGYG + G  +W+IKNSWGE+WG+ GY  +   K N CGI   AS+P
Sbjct:  206 QDESCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPISVSIDASLASFQFYSRGVYYDENCDRD--NVNHAVLVVGYGTQKGSKHWIIKNSWGESWGNKGYALLARNKNNACGITNMASFP 327          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATK_CHICK (Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.341e-19
Identity = 50/124 (40.32%), Postives = 67/124 (54.03%), Query Frame = -2
Query:  286 KDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYP 651
            +D  C +S      +      I    E  L+ AV  + PVSV  +  +  F+FY  GVY  T C   P ++NHAV+AVGYG + G  +W+IKNSWG  WG+ GY  +    K  CGIA  AS+P
Sbjct:  211 QDESCMYSPTGKAAKCRGYREIPEDNEKALKRAVARIGPVSVGIDASLPSFQFYSRGVYYDTGCN--PENINHAVLAVGYGAQKGTKHWIIKNSWGTEWGNKGYVLLARNMKQTCGIANLASFP 332          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATL1_RAT (Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.669e-19
Identity = 54/130 (41.54%), Postives = 72/130 (55.38%), Query Frame = -2
Query:  280 KDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 651
            KDG CK+ +E         V+I    E  L  AV  V P+SVA +      +FY SG+Y    C +   D++H V+ VGYG E    +   YWL+KNSWG+ WG  GY K+   + N CG+AT ASYP+V
Sbjct:  207 KDGSCKYRAEYAVANDTGFVDIPQ-QEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSK--DLDHGVLVVGYGYEGTDSNKDKYWLVKNSWGKEWGMDGYIKIAKDRNNHCGLATAASYPIV 333          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATS_RAT (Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.404e-19
Identity = 50/126 (39.68%), Postives = 67/126 (53.17%), Query Frame = -2
Query:  280 DGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVD--GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKM-EMGKNMCGIATCASYPVV 648
            D  C +  +N        + +  G E+ L+ AV    PVSV  +      F  Y+SGVY    C     ++NH V+ VGYG  DG  YWL+KNSWG ++GD GY +M    KN CGIA+  SYP +
Sbjct:  208 DEKCLYDPKNRAATCSRYIELPFGDEEALKEAVATKGPVSVGIDDASHSSFFLYQSGVYDDPSCTE---NMNHGVLVVGYGTLDGKDYWLVKNSWGLHFGDQGYIRMARNNKNHCGIASYCSYPEI 330          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATR_MOUSE (Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.404e-19
Identity = 50/130 (38.46%), Postives = 73/130 (56.15%), Query Frame = -2
Query:  280 KDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 651
            KDG C+++ +N   ++   V++   +ED L  AV  + P++   +   + F+ YK G+Y    C +    V H V+ VGYG +    DG  YWLIKNSWG+ WG  GY K+   K N CGIA+ A YP +
Sbjct:  208 KDGPCRYNPKNSKAEITGFVSLPQ-SEDILMAAVATIGPITAGIDASHESFKNYKGGIYHEPNCSSDT--VTHGVLVVGYGFKGIETDGNHYWLIKNSWGKRWGIRGYMKLAKDKNNHCGIASYAHYPTI 334          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATL1_MOUSE (Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.263e-18
Identity = 55/130 (42.31%), Postives = 70/130 (53.85%), Query Frame = -2
Query:  280 KDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 651
            KDG CK+ +E         V+I    E  L  AV  V P+SVA +      +FY SG+Y    C +  +D  H V+ VGYG E    +   YWL+KNSWG  WG  GY K+   + N CG+AT ASYPVV
Sbjct:  207 KDGSCKYRAEFAVANDTGFVDIPQ-QEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKNLD--HGVLLVGYGYEGTDSNKNKYWLVKNSWGSEWGMEGYIKIAKDRDNHCGLATAASYPVV 333          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATL1_HUMAN (Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.263e-18
Identity = 51/104 (49.04%), Postives = 60/104 (57.69%), Query Frame = -2
Query:  280 EDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 573
            E  L  AV  V P+SVA +   + F FYK G+Y    C +  MD  H V+ VGYG E    D   YWL+KNSWGE WG  GY KM    +N CGIA+ ASYP V
Sbjct:  232 EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD--HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 333          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: ACTN_ACTDE (Actinidain OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.263e-18
Identity = 52/128 (40.62%), Postives = 71/128 (55.47%), Query Frame = -2
Query:  283 KDGVCKFSSENVGVQVLDSV-NITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEM---GKNMCGIATCASYPV 651
            +DG C    +N     +D+  N+    E  LQ AV   +PVSVA +   D F+ Y SG+++   CG     ++HAV  VGYG E G+ YW++KNSW   WG+ GY ++     G   CGIAT  SYPV
Sbjct:  220 QDGECNLDLQNEKYVTIDTYENVPYNNEWALQTAV-TYQPVSVALDAAGDAFKHYSSGIFTGP-CGTA---IDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 342          
The following BLAST results are available for this feature:
BLAST of CB304924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
ORYA_ORYSJ3.324e-1941.86Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
CATL1_CERAE4.341e-1944.44Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE... [more]
CATK_MOUSE4.341e-1939.52Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2[more]
CATK_CHICK4.341e-1940.32Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1[more]
CATL1_RAT5.669e-1941.54Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV... [more]
CATS_RAT7.404e-1939.68Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1[more]
CATR_MOUSE7.404e-1938.46Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1[more]
CATL1_MOUSE1.263e-1842.31Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2[more]
CATL1_HUMAN1.263e-1849.04Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2[more]
ACTN_ACTDE1.263e-1840.63Actinidain OS=Actinidia deliciosa PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304924 ID=CB304924; Name=CB304924; organism=Citrus sinensis; type=EST; length=652bp
TTTTTTTTTTTTTTTTTTTTCGCATTGACAAAATATATATAACATCGTTG
GTGTCCTAGTCACAATGACTGTTTACATGGACATAGATCTCAGAATTTAT
TTTGAACATCAAGCAGCCATGCATTGCTATTGTAGATTATATGGACATTA
ATCTCCGAATTTATTTCGTACATAAAGCCAACCATTCTGCTATCACTCTT
AAGTGAAATAATATAAGTTTTATGAGCAAATGACTTGCTGATAGCCAGAT
CCAACTATTTCTTCAGGAGCAGACTAAGCCACAACTGGGTATGATGCACA
AGTTGCAATACCACACATGTTCTTCCCCATCTCCATCTTAAAGTAGCCAT
GATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAATCAGCCAATATGGAACA
CCATCTTCAACTCCGTACCCAACAGCAACGACGGCATGGTTCACATCCAT
GGGAGTATTTCCACATTTAGTGCTGCTGTAAACTCCACTCTTGTAAAATC
GGAATCCATCTACTACTTCAAATGCCACACTCACAGGTCGAACAAGACCA
ACTGCATGCTGTAATTCATCTTCAGCACCCAAGGTAATGTTGACTGAGTC
CAGGACTTGGACGCCAACATTTTCAGATGAGAATTTGCAGACACCATCTT
TT
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