CB304924

Overview
NameCB304924
Unique NameCB304924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CPP3_ENTHI (Cysteine proteinase 3 (Fragment) OS=Entamoeba histolytica GN=CPNP PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.650e-18
Identity = 40/73 (54.79%), Postives = 47/73 (64.38%), Query Frame = -2
Query:  286 FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYP 504
            F+ YKSG YS TKC N    +NH V AVGYGV DG   W+++NSWG  WGD GY  M +  N CG+AT   YP
Sbjct:  230 FQLYKSGAYSDTKCKNNFFALNHEVCAVGYGVVDGKECWIVRNSWGTGWGDKGYINMVIEGNTCGVATDPLYP 302          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.154e-18
Identity = 51/125 (40.80%), Postives = 67/125 (53.60%), Query Frame = -2
Query:  280 DGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 648
            D  C++ S+           +  G ED L+ AV    PVSV  +     F  Y+SGVY    C     +VNH V+ VGYG  +G  YWL+KNSWG N+G+ GY +M   K N CGIA+  SYP +
Sbjct:  210 DQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC---TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 331          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: ACTN_ACTCH (Actinidain OS=Actinidia chinensis PE=1 SV=4)

HSP 1 Score: 92.4337 bits (228), Expect = 2.154e-18
Identity = 53/128 (41.41%), Postives = 71/128 (55.47%), Query Frame = -2
Query:  283 KDGVCKFSSENVGVQVLDSV-NITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEM---GKNMCGIATCASYPV 651
            +DG C    +N     +D+  N+    E  LQ AV   +PVSVA +   D F+ Y SG+++   CG     V+HAV  VGYG E G+ YW++KNSW   WG+ GY ++     G   CGIAT  SYPV
Sbjct:  220 QDGECNVDLQNEKYVTIDTYENVPYNNEWALQTAV-TYQPVSVALDAAGDAFKQYSSGIFTGP-CGTA---VDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 342          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: ACP2_ENTHI (Cysteine proteinase ACP2 (Fragment) OS=Entamoeba histolytica GN=ACP2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.154e-18
Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = -2
Query:  286 FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYP 504
            F+ YKSG Y+ TKC N    +NH V AVGYGV DG   W+++NSWG +WGD GY  M +  N CG+AT   YP
Sbjct:  232 FQLYKSGAYTDTKCKNNYFALNHEVCAVGYGVVDGKECWIVRNSWGTSWGDKGYINMVIEGNTCGVATDPLYP 304          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.814e-18
Identity = 54/128 (42.19%), Postives = 76/128 (59.38%), Query Frame = -2
Query:  283 DGVCKFSSENVGVQVLDSV-NITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 648
            +G C    +N  V  +D   ++    E  L+ AV   +PVSVA +     F+ Y+SG+++  KCG    +++HAVVAVGYG E+GV YW+++NSWG  WG+ GY +ME         CGIA  ASYPV
Sbjct:  193 NGKCNSLLKNSRVVTIDGYEDVPSKDETALKRAVSY-QPVSVAIDAGGRAFQHYQSGIFTG-KCGT---NMDHAVVAVGYGSENGVDYWIVRNSWGTRWGEDGYIRMERNVASKSGKCGIAIEASYPV 315          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CPP2_ENTHI (Cysteine proteinase 2 OS=Entamoeba histolytica GN=CPP2 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.814e-18
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = -2
Query:  286 FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYP 504
            F+ YKSG Y+ TKC N    +NH V AVGYGV DG   W+++NSWG  WGD GY  M +  N CG+AT   YP
Sbjct:  237 FQLYKSGAYTDTKCKNNYFALNHEVCAVGYGVVDGKECWIVRNSWGTGWGDKGYINMVIEGNTCGVATDPLYP 309          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.814e-18
Identity = 48/122 (39.34%), Postives = 71/122 (58.20%), Query Frame = -2
Query:  280 CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVR--PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 639
            C FS+E   V + DSV ++   ++E + A  L +  P+SVA     G +FY+ G+    +   +P  ++HAV+ VGYG    VP+W IKNSWG +WG+ GY+ +  G   CG+ T AS  VV
Sbjct:  366 CNFSAEKAKVYINDSVELS---QNEQKLAAWLAKRGPISVAINAF-GMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGNRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVV 483          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.675e-18
Identity = 53/137 (38.69%), Postives = 78/137 (56.93%), Query Frame = -2
Query:  262 KDGVCKFSSENVGVQVLDS-VNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV-EDGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPVVA*SAPE 651
            +DG C  +  N  V  +D   ++    E+ L  AV   +P+SV+ E    GF+FY  GV++  +CG    +++H V  VGYG   DG  YW++KNSWGE WG+ GY +M+ G    +  CGIA  ASYP+   + P+
Sbjct:  221 QDGTCASNLLNSPVVSIDGHQDVPANNENALMQAVAN-QPISVSIEASGYGFQFYSEGVFTG-RCGT---ELDHGVAIVGYGATRDGTKYWIVKNSWGEEWGESGYIRMQRGISDKRGKCGIAMEASYPIKTSANPK 352          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATM_MOUSE (Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.675e-18
Identity = 54/130 (41.54%), Postives = 70/130 (53.85%), Query Frame = -2
Query:  280 KDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV----EDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 651
            KDG C++S EN    +     +    ED L +AV  + P+SVA +     F FYK G+Y    C +    V H+++ VGYG      DG  YWL+KNS G  WG+ GY K+   K N CGIAT A YP V
Sbjct:  207 KDGSCRYSPENSTANITGFEFVPKN-EDALMNAVASIGPISVAIDARHASFLFYKRGIYYEPNCSSCV--VTHSMLLVGYGFTGRESDGRKYWLVKNSMGTQWGNKGYMKISRDKGNHCGIATYALYPRV 333          
BLAST of CB304924 vs. ExPASy Swiss-Prot
Match: CATL1_SHEEP (Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.675e-18
Identity = 53/126 (42.06%), Postives = 69/126 (54.76%), Query Frame = -2
Query:  280 DGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVED-GVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 648
            D  C +  E    +    V+I    E  L  AV  V P+SVA +     F+FYKSG+Y    C +   D++H V+ VGYG E     +W++KNSWG  WG+ GY KM   + N CGIAT ASYP V
Sbjct:   95 DTSCNYKPEYSAAKDTGFVDIPQ-REKALMKAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSK--DLDHGVLVVGYGFEGTNNKFWIVKNSWGPEWGNKGYVKMAKDQNNHCGIATAASYPTV 217          
The following BLAST results are available for this feature:
BLAST of CB304924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
CPP3_ENTHI1.650e-1854.79Cysteine proteinase 3 (Fragment) OS=Entamoeba hist... [more]
CATS_HUMAN2.154e-1840.80Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
ACTN_ACTCH2.154e-1841.41Actinidain OS=Actinidia chinensis PE=1 SV=4[more]
ACP2_ENTHI2.154e-1853.42Cysteine proteinase ACP2 (Fragment) OS=Entamoeba h... [more]
CYSP4_BRANA2.814e-1842.19Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
CPP2_ENTHI2.814e-1853.42Cysteine proteinase 2 OS=Entamoeba histolytica GN=... [more]
CATF_HUMAN2.814e-1839.34Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
CYSP_HEMSP3.675e-1838.69Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]
CATM_MOUSE3.675e-1841.54Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1[more]
CATL1_SHEEP3.675e-1842.06Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304924 ID=CB304924; Name=CB304924; organism=Citrus sinensis; type=EST; length=652bp
TTTTTTTTTTTTTTTTTTTTCGCATTGACAAAATATATATAACATCGTTG
GTGTCCTAGTCACAATGACTGTTTACATGGACATAGATCTCAGAATTTAT
TTTGAACATCAAGCAGCCATGCATTGCTATTGTAGATTATATGGACATTA
ATCTCCGAATTTATTTCGTACATAAAGCCAACCATTCTGCTATCACTCTT
AAGTGAAATAATATAAGTTTTATGAGCAAATGACTTGCTGATAGCCAGAT
CCAACTATTTCTTCAGGAGCAGACTAAGCCACAACTGGGTATGATGCACA
AGTTGCAATACCACACATGTTCTTCCCCATCTCCATCTTAAAGTAGCCAT
GATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAATCAGCCAATATGGAACA
CCATCTTCAACTCCGTACCCAACAGCAACGACGGCATGGTTCACATCCAT
GGGAGTATTTCCACATTTAGTGCTGCTGTAAACTCCACTCTTGTAAAATC
GGAATCCATCTACTACTTCAAATGCCACACTCACAGGTCGAACAAGACCA
ACTGCATGCTGTAATTCATCTTCAGCACCCAAGGTAATGTTGACTGAGTC
CAGGACTTGGACGCCAACATTTTCAGATGAGAATTTGCAGACACCATCTT
TT
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