CB304930

Overview
NameCB304930
Unique NameCB304930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304930_ssr34 microsatellite CB304930_ssr34:34..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1001 contig Csv1_Contig1001:978..1622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_PICPA (Elongation factor 2 OS=Pichia pastoris GN=EFT1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.401e-22
Identity = 48/84 (57.14%), Postives = 63/84 (75.00%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            QRPGTPL+ +KAYLPV ESFGF+G LR AT+GQAFPQ VFDHW  M+ +PL+P ++  ++V   RK +G+KE +    E+ DKL
Sbjct:  759 QRPGTPLFTVKAYLPVNESFGFTGELRQATAGQAFPQMVFDHWANMNGNPLDPASKVGEIVLAARKRQGMKENVPGYEEYYDKL 842          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_CAEEL (Elongation factor 2 OS=Caenorhabditis elegans GN=eft-2 PE=2 SV=4)

HSP 1 Score: 105.531 bits (262), Expect = 2.389e-22
Identity = 49/84 (58.33%), Postives = 61/84 (72.62%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            Q  GTP++ +KAYLPV ESFGF+  LR+ T GQAFPQCVFDHW ++  DPLE GT+  Q+V D RK KGLKE +  L  + DK+
Sbjct:  769 QVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVPALDNYLDKM 852          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_NEUCR (Elongation factor 2 OS=Neurospora crassa GN=cot-3 PE=3 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 4.075e-22
Identity = 50/85 (58.82%), Postives = 64/85 (75.29%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMM-SSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            QRPGTPL+ IKAYLPV+ESFGF+G LRAATSGQAFPQ VFDHW+ +    PL+  ++  Q+V ++RK KGLK ++     + DKL
Sbjct:  760 QRPGTPLFTIKAYLPVMESFGFNGDLRAATSGQAFPQSVFDHWERLPGGSPLDSTSKVGQIVQEMRKRKGLKVEVPGYENYYDKL 844          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_DROME (Elongation factor 2 OS=Drosophila melanogaster GN=Ef2b PE=1 SV=4)

HSP 1 Score: 103.219 bits (256), Expect = 1.186e-21
Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = -3
Query:  389 GTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 631
            GTP++ +KAYLPV ESFGF+  LR+ T GQAFPQCVFDHW ++  DP EP ++   +V D RK KGLKE +  LS++ DKL
Sbjct:  764 GTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPSEPSSKPYAIVQDTRKRKGLKEGLPDLSQYLDKL 844          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_CRIGR (Elongation factor 2 OS=Cricetulus griseus GN=EEF2 PE=3 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 2.641e-21
Identity = 47/84 (55.95%), Postives = 61/84 (72.62%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            Q  GTP++ +KAYLPV ESFGF+  LR+ T GQAFPQCVFDHW ++  DP +  ++ +Q+VA+ RK KGLKE +  L  F DKL
Sbjct:  775 QVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNSSRGSQVVAETRKRKGLKEGIPALDNFLDKL 858          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_CHICK (Elongation factor 2 OS=Gallus gallus GN=EEF2 PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 2.641e-21
Identity = 47/84 (55.95%), Postives = 61/84 (72.62%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            Q  GTP++ +KAYLPV ESFGF+  LR+ T GQAFPQCVFDHW ++  DP +  ++ +Q+VA+ RK KGLKE +  L  F DKL
Sbjct:  775 QVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDSASRPSQVVAETRKRKGLKEGIPALDNFLDKL 858          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_RAT (Elongation factor 2 OS=Rattus norvegicus GN=Eef2 PE=1 SV=4)

HSP 1 Score: 101.679 bits (252), Expect = 3.450e-21
Identity = 47/84 (55.95%), Postives = 61/84 (72.62%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            Q  GTP++ +KAYLPV ESFGF+  LR+ T GQAFPQCVFDHW ++  DP +  ++ +Q+VA+ RK KGLKE +  L  F DKL
Sbjct:  775 QVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNSSRPSQVVAETRKRKGLKEGIPALDNFLDKL 858          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_PONAB (Elongation factor 2 OS=Pongo abelii GN=EEF2 PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 3.450e-21
Identity = 47/84 (55.95%), Postives = 61/84 (72.62%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            Q  GTP++ +KAYLPV ESFGF+  LR+ T GQAFPQCVFDHW ++  DP +  ++ +Q+VA+ RK KGLKE +  L  F DKL
Sbjct:  775 QVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNSSRPSQVVAETRKRKGLKEGIPALDNFLDKL 858          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_MOUSE (Elongation factor 2 OS=Mus musculus GN=Eef2 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.450e-21
Identity = 47/84 (55.95%), Postives = 61/84 (72.62%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            Q  GTP++ +KAYLPV ESFGF+  LR+ T GQAFPQCVFDHW ++  DP +  ++ +Q+VA+ RK KGLKE +  L  F DKL
Sbjct:  775 QVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNSSRPSQVVAETRKRKGLKEGIPALDNFLDKL 858          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_MESAU (Elongation factor 2 OS=Mesocricetus auratus GN=EEF2 PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 3.450e-21
Identity = 47/84 (55.95%), Postives = 61/84 (72.62%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            Q  GTP++ +KAYLPV ESFGF+  LR+ T GQAFPQCVFDHW ++  DP +  ++ +Q+VA+ RK KGLKE +  L  F DKL
Sbjct:  775 QVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNSSRPSQVVAETRKRKGLKEGIPALDNFLDKL 858          
The following BLAST results are available for this feature:
BLAST of CB304930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
EF2_PICPA1.401e-2257.14Elongation factor 2 OS=Pichia pastoris GN=EFT1 PE=... [more]
EF2_CAEEL2.389e-2258.33Elongation factor 2 OS=Caenorhabditis elegans GN=e... [more]
EF2_NEUCR4.075e-2258.82Elongation factor 2 OS=Neurospora crassa GN=cot-3 ... [more]
EF2_DROME1.186e-2158.02Elongation factor 2 OS=Drosophila melanogaster GN=... [more]
EF2_CRIGR2.641e-2155.95Elongation factor 2 OS=Cricetulus griseus GN=EEF2 ... [more]
EF2_CHICK2.641e-2155.95Elongation factor 2 OS=Gallus gallus GN=EEF2 PE=1 ... [more]
EF2_RAT3.450e-2155.95Elongation factor 2 OS=Rattus norvegicus GN=Eef2 P... [more]
EF2_PONAB3.450e-2155.95Elongation factor 2 OS=Pongo abelii GN=EEF2 PE=2 S... [more]
EF2_MOUSE3.450e-2155.95Elongation factor 2 OS=Mus musculus GN=Eef2 PE=1 S... [more]
EF2_MESAU3.450e-2155.95Elongation factor 2 OS=Mesocricetus auratus GN=EEF... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_C07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_C07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304930 ID=CB304930; Name=CB304930; organism=Citrus sinensis; type=EST; length=645bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCATAATAATAATAATAAT
ATATCAACCAACGTCGGCCAGAATTAGTTTAAACACATGACAGAACATCA
AACCTTAAAAGCTGTGAATTGTAAAATTTAAAACCTAGATGACAGAGACA
GGGTTACTAAACCCAATCAACAGTAATATTACTTTACTAAACACAATGAG
GATATTGAAAAACTTTGAAACAAAAATAAGCATCAGCAAAAAATATTGCT
GCGCAATCTCACCCTTGATGTCAAGATGAAATGTTTACAGCTCGTCCTCT
ACTCGGATAGCGGTGTCATTTGCTCCCTCTTCCTGATATCAGCAACAAGC
TGCGCAATCTCACCCTTGATGTCAAGACGAAATGTTTACAGCTTGTCCTC
AAACTCAGATAGTGGTGTCATTTGCTCCTTCAAGCCCTTCCACTTCCTGA
TATCAGCAACAAGCTGTGCAGCCTGTGTACCAGGCTCCAGTGGATCGGAT
GACATCATGTCCCAGTGATCAAACACACATTGTGGGAAGGCCTGTCCTGA
CGTTGCAGCCCTCAAAGGGCCTGAGAATCCAAAGGACTCGATGACGGGAA
GGTAAGCCTTGATGTTGTAAAGGGGGGTACCAGGTCTCTGCATTT
back to top