CB304930

Overview
NameCB304930
Unique NameCB304930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304930_ssr34 microsatellite CB304930_ssr34:34..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1001 contig Csv1_Contig1001:978..1622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_HUMAN (Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4)

HSP 1 Score: 101.679 bits (252), Expect = 3.450e-21
Identity = 47/84 (55.95%), Postives = 61/84 (72.62%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            Q  GTP++ +KAYLPV ESFGF+  LR+ T GQAFPQCVFDHW ++  DP +  ++ +Q+VA+ RK KGLKE +  L  F DKL
Sbjct:  775 QVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNSSRPSQVVAETRKRKGLKEGIPALDNFLDKL 858          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_CALJA (Elongation factor 2 OS=Callithrix jacchus GN=EEF2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.884e-21
Identity = 47/84 (55.95%), Postives = 61/84 (72.62%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            Q  GTP++ +KAYLPV ESFGF+  LR+ T GQAFPQCVFDHW ++  DP +  ++ +Q+VA+ RK KGLKE +  L  F DKL
Sbjct:  775 QVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTSRPSQVVAETRKRKGLKEGIPALDNFLDKL 858          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_BOVIN (Elongation factor 2 OS=Bos taurus GN=EEF2 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 5.884e-21
Identity = 47/84 (55.95%), Postives = 61/84 (72.62%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            Q  GTP++ +KAYLPV ESFGF+  LR+ T GQAFPQCVFDHW ++  DP +  ++ +Q+VA+ RK KGLKE +  L  F DKL
Sbjct:  775 QVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTSRPSQVVAETRKRKGLKEGIPALDNFLDKL 858          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_BOMMO (Translation elongation factor 2 OS=Bombyx mori GN=tef2 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.685e-21
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            Q  GTP++ +KAYLPV ESFGF+  LR+ T GQAFPQCVFDHW ++  DP EP ++   +V + RK KGLKE +  L+++ DKL
Sbjct:  761 QVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLPDLTQYLDKL 844          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_CRYPV (Elongation factor 2 OS=Cryptosporidium parvum PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.004e-20
Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = -3
Query:  389 RPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 637
            + GTP   IKAYLPV +SF F+  LRAATSG+AFPQCVFDHW++++ DPLE G++  +LV  IR+ K +KE++  L  + DKL
Sbjct:  750 KSGTPQVEIKAYLPVADSFKFTTVLRAATSGKAFPQCVFDHWELINGDPLEKGSKTEELVKAIRRRKNIKEEIPALDNYLDKL 832          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_DEBHA (Elongation factor 2 OS=Debaryomyces hansenii GN=EFT1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.712e-20
Identity = 44/84 (52.38%), Postives = 60/84 (71.43%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            QRPGTPL+ +KAYLPV ESFGFSG LR +T GQAFPQ +FDHW  ++ DP +P ++   +V + R+ +G+K  +    E+ DKL
Sbjct:  759 QRPGTPLFTVKAYLPVNESFGFSGELRQSTGGQAFPQLIFDHWANLNGDPTDPTSKVGTIVKEKRERQGMKPDVPGYEEYYDKL 842          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_CANAL (Elongation factor 2 OS=Candida albicans GN=EFT2 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.981e-20
Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            QRPGTPL+ +KAYLPV ESFGF+G LR AT GQAFPQ +FDHW +MS D  +  ++   +V + R   GLK ++   +E+ DKL
Sbjct:  759 QRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQLIFDHWQVMSGDVTDENSKPGAIVKEKRVRAGLKPEVPEYTEYYDKL 842          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_PICGU (Elongation factor 2 OS=Pichia guilliermondii GN=EFT2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.497e-20
Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            QRPGTPL+ +KAYLPV ESFGFSG LR AT GQAFPQ VFDHW ++S D  +P ++   +    R+ +GLK ++    E+ DKL
Sbjct:  759 QRPGTPLFTVKAYLPVNESFGFSGDLRQATGGQAFPQLVFDHWAVLSGDVTDPTSKPGIIAKAKRERQGLKPEVPGYEEYYDKL 842          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_BLAHO (Elongation factor 2 OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.039e-17
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = -3
Query:  389 GTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMS-SDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 631
            GTP+ NIK+YLPV ESFGF+  LR AT+GQAFPQCVF HW   +  DPL  GT+  ++V  IR  KGL  ++     + DKL
Sbjct:  786 GTPMMNIKSYLPVAESFGFTQDLRGATAGQAFPQCVFSHWQAYNGGDPLTEGTKTNEMVKSIRNRKGLAPEVPTPERYLDKL 867          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_DICDI (Elongation factor 2 OS=Dictyostelium discoideum GN=efbA PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.270e-15
Identity = 40/84 (47.62%), Postives = 58/84 (69.05%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            +R G+PL+++KA+LPV+ESFGF+  LR+ T+GQAFPQCVFDHW   S   +    +A ++    RK KGL  ++  L +F +KL
Sbjct:  758 RRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHW--ASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKL 839          
The following BLAST results are available for this feature:
BLAST of CB304930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
EF2_HUMAN3.450e-2155.95Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 S... [more]
EF2_CALJA5.884e-2155.95Elongation factor 2 OS=Callithrix jacchus GN=EEF2 ... [more]
EF2_BOVIN5.884e-2155.95Elongation factor 2 OS=Bos taurus GN=EEF2 PE=2 SV=... [more]
EF2_BOMMO7.685e-2154.76Translation elongation factor 2 OS=Bombyx mori GN=... [more]
EF2_CRYPV1.004e-2055.42Elongation factor 2 OS=Cryptosporidium parvum PE=3... [more]
EF2_DEBHA1.712e-2052.38Elongation factor 2 OS=Debaryomyces hansenii GN=EF... [more]
EF2_CANAL4.981e-2053.57Elongation factor 2 OS=Candida albicans GN=EFT2 PE... [more]
EF2_PICGU8.497e-2054.76Elongation factor 2 OS=Pichia guilliermondii GN=EF... [more]
EF2_BLAHO1.039e-1753.66Elongation factor 2 OS=Blastocystis hominis PE=2 S... [more]
EF2_DICDI1.270e-1547.62Elongation factor 2 OS=Dictyostelium discoideum GN... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_C07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_C07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304930 ID=CB304930; Name=CB304930; organism=Citrus sinensis; type=EST; length=645bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCATAATAATAATAATAAT
ATATCAACCAACGTCGGCCAGAATTAGTTTAAACACATGACAGAACATCA
AACCTTAAAAGCTGTGAATTGTAAAATTTAAAACCTAGATGACAGAGACA
GGGTTACTAAACCCAATCAACAGTAATATTACTTTACTAAACACAATGAG
GATATTGAAAAACTTTGAAACAAAAATAAGCATCAGCAAAAAATATTGCT
GCGCAATCTCACCCTTGATGTCAAGATGAAATGTTTACAGCTCGTCCTCT
ACTCGGATAGCGGTGTCATTTGCTCCCTCTTCCTGATATCAGCAACAAGC
TGCGCAATCTCACCCTTGATGTCAAGACGAAATGTTTACAGCTTGTCCTC
AAACTCAGATAGTGGTGTCATTTGCTCCTTCAAGCCCTTCCACTTCCTGA
TATCAGCAACAAGCTGTGCAGCCTGTGTACCAGGCTCCAGTGGATCGGAT
GACATCATGTCCCAGTGATCAAACACACATTGTGGGAAGGCCTGTCCTGA
CGTTGCAGCCCTCAAAGGGCCTGAGAATCCAAAGGACTCGATGACGGGAA
GGTAAGCCTTGATGTTGTAAAGGGGGGTACCAGGTCTCTGCATTT
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