CB304930

Overview
NameCB304930
Unique NameCB304930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304930_ssr34 microsatellite CB304930_ssr34:34..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1001 contig Csv1_Contig1001:978..1622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.897e-11
Identity = 36/94 (38.30%), Postives = 50/94 (53.19%), Query Frame = -3 
Query:  389 PGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKWKGLKEQMTPLSEFEDKL 634
            PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+ KGL E ++    F+D +
Sbjct:  864 PGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957
[Close]
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.897e-11
Identity = 36/94 (38.30%), Postives = 50/94 (53.19%), Query Frame = -3 
Query:  389 PGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKWKGLKEQMTPLSEFEDKL 634
            PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+ KGL E ++    F+D +
Sbjct:  863 PGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 956
[Close]
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.897e-11
Identity = 36/94 (38.30%), Postives = 50/94 (53.19%), Query Frame = -3 
Query:  389 PGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKWKGLKEQMTPLSEFEDKL 634
            PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+ KGL E ++    F+D +
Sbjct:  864 PGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957
[Close]
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.897e-11
Identity = 36/94 (38.30%), Postives = 50/94 (53.19%), Query Frame = -3 
Query:  389 PGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKWKGLKEQMTPLSEFEDKL 634
            PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+ KGL E ++    F+D +
Sbjct:  864 PGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957
[Close]
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.897e-11
Identity = 36/94 (38.30%), Postives = 50/94 (53.19%), Query Frame = -3 
Query:  389 PGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKWKGLKEQMTPLSEFEDKL 634
            PG+PLY IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+ KGL E ++    F+D +
Sbjct:  864 PGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957
[Close]
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11
Identity = 35/95 (36.84%), Postives = 51/95 (53.68%), Query Frame = -3 
Query:  389 RPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQ------------AAQLVADIRKWKGLKEQMTPLSEFEDKL 637
            RPG+PLY ++A +PVI+S GF   LR  T GQA  Q VFDHW ++  DPL+   +            A   +   R+ KGL E ++    F+ ++
Sbjct:  876 RPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKPKPLEPARGSDLARDFLIKTRRRKGLVEDVSTTRYFDQEM 970
The following BLAST results are available for this feature:
BLAST of CB304930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
U5S1_PONAB1.897e-1138.30116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_MOUSE1.897e-1138.30116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_HUMAN1.897e-1138.30116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_CHICK1.897e-1138.30116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_BOVIN1.897e-1138.30116 kDa U5 small nuclear ribonucleoprotein compone... [more]
SN114_SCHPO9.416e-1136.84114 kDa U5 small nuclear ribonucleoprotein compone... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_C07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_C07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304930 ID=CB304930; Name=CB304930; organism=Citrus sinensis; type=EST; length=645bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCATAATAATAATAATAAT
ATATCAACCAACGTCGGCCAGAATTAGTTTAAACACATGACAGAACATCA
AACCTTAAAAGCTGTGAATTGTAAAATTTAAAACCTAGATGACAGAGACA
GGGTTACTAAACCCAATCAACAGTAATATTACTTTACTAAACACAATGAG
GATATTGAAAAACTTTGAAACAAAAATAAGCATCAGCAAAAAATATTGCT
GCGCAATCTCACCCTTGATGTCAAGATGAAATGTTTACAGCTCGTCCTCT
ACTCGGATAGCGGTGTCATTTGCTCCCTCTTCCTGATATCAGCAACAAGC
TGCGCAATCTCACCCTTGATGTCAAGACGAAATGTTTACAGCTTGTCCTC
AAACTCAGATAGTGGTGTCATTTGCTCCTTCAAGCCCTTCCACTTCCTGA
TATCAGCAACAAGCTGTGCAGCCTGTGTACCAGGCTCCAGTGGATCGGAT
GACATCATGTCCCAGTGATCAAACACACATTGTGGGAAGGCCTGTCCTGA
CGTTGCAGCCCTCAAAGGGCCTGAGAATCCAAAGGACTCGATGACGGGAA
GGTAAGCCTTGATGTTGTAAAGGGGGGTACCAGGTCTCTGCATTT
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