CB304939

Overview
NameCB304939
Unique NameCB304939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304939_ssr184 microsatellite CB304939_ssr184:184..193. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2589 contig Csv1_Contig2589:532..1076. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304939 vs. ExPASy Swiss-Prot
Match: RC21_ARATH (UPF0057 membrane protein At1g57550 OS=Arabidopsis thaliana GN=At1g57550 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 26/48 (54.17%), Postives = 40/48 (83.33%), Query Frame = -3
Query:  334 VDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 477
            +++L A+ +PP+GVFL++G   EFW+CLLLT+  +IPG+IYA+Y +TK
Sbjct:    5 LEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52          
BLAST of CB304939 vs. ExPASy Swiss-Prot
Match: RC22_ARATH (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana GN=At2g24040 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.350e-11
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = -3
Query:  340 STATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 492
            S   C +I +A++LPP+GV L+ GC   EF+ICL+LT LGY+PGIIYA+YAI
Sbjct:    4 SCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAI 55          
BLAST of CB304939 vs. ExPASy Swiss-Prot
Match: PMP3_GIBZE (Plasma membrane proteolipid 3 OS=Gibberella zeae GN=PMP3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.764e-11
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = -3
Query:  334 ILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 471
            I+LA+ILPP+GVFL+ GC A+F+I +LLTILGYIPGII+A+Y I K
Sbjct:   21 IILAIILPPVGVFLERGCGADFFINILLTILGYIPGIIHALYIILK 66          
BLAST of CB304939 vs. ExPASy Swiss-Prot
Match: RC23_ARATH (UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.303e-11
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = -3
Query:  340 MADGSTATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 504
            MA      C +IL+A++LPPLGV LK GC   EF ICL+LTILGYIPGIIYA+Y I
Sbjct:    1 MASNMEVFC-EILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVI 55          
BLAST of CB304939 vs. ExPASy Swiss-Prot
Match: PMP3_CRYNE (Plasma membrane proteolipid 3 OS=Cryptococcus neoformans GN=PMP3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.008e-11
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = -3
Query:  334 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 483
            TC DI   +LA+ILPPLGVFL+ GC A+  I +LLTILGYIPGII+A+Y I K
Sbjct:    4 TCSDIFKIILAIILPPLGVFLERGCGADLLINILLTILGYIPGIIHALYIILK 56          
BLAST of CB304939 vs. ExPASy Swiss-Prot
Match: Y567_PSEAE (UPF0057 membrane protein PA0567 OS=Pseudomonas aeruginosa GN=PA0567 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.929e-11
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = -3
Query:  331 VDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITKK 477
            + IL+A++LPPLGVFL+ G    FW+ +LLT+LGYIPGI++AVY I K+
Sbjct:    4 IRILIAILLPPLGVFLQVGFGGAFWLNILLTLLGYIPGIVHAVYIIAKR 52          
BLAST of CB304939 vs. ExPASy Swiss-Prot
Match: YCU3_CAEEL (UPF0057 membrane protein T23F2.3 OS=Caenorhabditis elegans GN=T23F2.3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.131e-11
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = -3
Query:  340 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 483
            TC DI   + AV+LPP+GVFL+ GC     IC+LLTILGYIPGIIYA Y I
Sbjct:    4 TCTDIPKFICAVLLPPIGVFLEKGCDYHLAICILLTILGYIPGIIYACYVI 54          
BLAST of CB304939 vs. ExPASy Swiss-Prot
Match: YCU4_CAEEL (UPF0057 membrane protein T23F2.4 OS=Caenorhabditis elegans GN=T23F2.4 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 6.702e-11
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = -3
Query:  340 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 483
            TC+DI   L A++LPP+GVFL+ GC     IC+LLTILGYIPGIIYA Y I
Sbjct:    4 TCMDIPKFLFALLLPPVGVFLEKGCTHHLAICILLTILGYIPGIIYACYII 54          
The following BLAST results are available for this feature:
BLAST of CB304939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RC21_ARATH4.641e-1254.17UPF0057 membrane protein At1g57550 OS=Arabidopsis ... [more]
RC22_ARATH1.350e-1159.62UPF0057 membrane protein At2g24040 OS=Arabidopsis ... [more]
PMP3_GIBZE1.764e-1169.57Plasma membrane proteolipid 3 OS=Gibberella zeae G... [more]
RC23_ARATH2.303e-1164.29UPF0057 membrane protein At4g30650 OS=Arabidopsis ... [more]
PMP3_CRYNE3.008e-1166.04Plasma membrane proteolipid 3 OS=Cryptococcus neof... [more]
Y567_PSEAE3.929e-1159.18UPF0057 membrane protein PA0567 OS=Pseudomonas aer... [more]
YCU3_CAEEL5.131e-1164.71UPF0057 membrane protein T23F2.3 OS=Caenorhabditis... [more]
YCU4_CAEEL6.702e-1164.71UPF0057 membrane protein T23F2.4 OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_E01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_E01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304939 ID=CB304939; Name=CB304939; organism=Citrus sinensis; type=EST; length=548bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTGTGGGGACTTGTAA
TGATTCACAAGGCAATTTACACACTCAATAATACTCCACTTTACATCAAC
ATATTGAATTAAAATTCATTAAAAAGGACAAATGAAAGAAAAGAAAACGA
TAAAGATTAACAAACGAAACAAGTGCTCTCTCCCACACACACACGCACAC
CCCAGTTGATTAAGAATCAGAACCCATCTGGCTACATCAAATCAGAGCTG
CCCATCTAACGGTTGTAAATAAAAGATCTCATAACACATGATGCCCTTGG
GATCTCTCAATAGATGAAGACGAAAGATCACTTCTTGGTGATGGCATAAA
CAGCATAAATAATTCCAGGGATATACCCCAGAATTGTCAAGAGCAAACAG
ATCCAAAACTCAGCCTTGCAACCAAATTTGAGAAAGACACCAAGAGGAGG
CAAGATAACAGCCAAGAGAATATCTACGCATGTTGCTGTGCTTCCATCTG
CCATCTTTGATTGATTCTTAAAAAGTGTAAAATGGAATAAAATAAAAT
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