CB304941

Overview
NameCB304941
Unique NameCB304941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304941_ssr121 microsatellite CB304941_ssr121:121..132. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6967 contig Csv1_Contig6967:59..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB1B_RABIT (Peptidyl-prolyl cis-trans isomerase FKBP1B OS=Oryctolagus cuniculus GN=FKBP1B PE=3 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 5.634e-17
Identity = 51/113 (45.13%), Postives = 72/113 (63.72%), Query Frame = -1
Query:  203 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 538
            MG+E + ++PG+G   P  GQ   VH TG  +NG   +KF S +D  + PF F+IGK  VIKG++EG   M +G+ A+L C+PD AYGA G P   I PN+ L F +++L +E
Sbjct:    1 MGVEIETISPGDGRTFPKKGQTCVVHYTGMLQNG---KKFDSSRDRNK-PFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVAYGATGHP-GVIPPNATLIFGVELLNLE 108          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP4_USTMA (FK506-binding protein 4 OS=Ustilago maydis GN=FPR4 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.609e-17
Identity = 52/128 (40.62%), Postives = 73/128 (57.03%), Query Frame = -1
Query:  203 IKKSYQKVKNPKTEKEMGIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 586
            + KS  K+   K    + IE++  + G+GP   AGQKV +   G   NG +  +  S K     PF F++GKG VIKGWDEGV GM+VG   RL C P  AYG    P  GI  NS L F++++++++
Sbjct:  257 VDKSTSKMTTTKLPSGLVIEEK--SAGSGPPCKAGQKVGMRYVGKLTNGKVFDQCTSGK-----PFYFKLGKGEVIKGWDEGVKGMRVGAERRLTCPPKLAYGNQKIP--GIPANSTLVFDVKLVEIK 375          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP5_PONAB (FK506-binding protein 5 OS=Pongo abelii GN=FKBP5 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.141e-16
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = -1
Query:  212 TEKEMGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYG-AGGFPQWGIQPNSVLDFEIQVL 550
            ++K+ G+ K +   GNG + P+ G KV VH  G   NG   +KF S  D  + PF F +GKG VIK WD GV  M+ GE+  L C P+YAYG AG  P+  I  N+ L FEI++L
Sbjct:   27 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNG---KKFDSSHDRNE-PFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPK--IPSNATLFFEIELL 135          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP5_HUMAN (FK506-binding protein 5 OS=Homo sapiens GN=FKBP5 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.141e-16
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = -1
Query:  212 TEKEMGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYG-AGGFPQWGIQPNSVLDFEIQVL 550
            ++K+ G+ K +   GNG + P+ G KV VH  G   NG   +KF S  D  + PF F +GKG VIK WD GV  M+ GE+  L C P+YAYG AG  P+  I  N+ L FEI++L
Sbjct:   27 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNG---KKFDSSHDRNE-PFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPK--IPSNATLFFEIELL 135          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP_CANGA (FK506-binding protein 1 OS=Candida glabrata GN=FPR1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.796e-16
Identity = 53/113 (46.90%), Postives = 67/113 (59.29%), Query Frame = -1
Query:  206 EMGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 541
            E G++   L+PG+G   P  G  VT+H TG  +NG   QKF S  D G  PF   IG G VIKGWD G+  + VGE ARL     YAYG  GFP   I PN+ L F++++L+V
Sbjct:    6 EGGVKIDRLSPGDGKTFPKQGDLVTIHYTGTLENG---QKFDSSVDRGS-PFQCNIGVGQVIKGWDAGIPKLSVGEKARLTIPGPYAYGPRGFPGL-IPPNATLIFDVELLKV 113          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB1A_RAT (Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Rattus norvegicus GN=Fkbp1a PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 2.796e-16
Identity = 49/113 (43.36%), Postives = 73/113 (64.60%), Query Frame = -1
Query:  203 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 538
            MG++ + ++ G+G   P  GQ   VH TG  ++G   +KF S +D  + PF F +GK  VI+GW+EGV  M VG+ A+L  SPDYAYGA G P   I P++ L F++++L++E
Sbjct:    1 MGVQVETISSGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRDRNK-PFKFTLGKQEVIRGWEEGVAQMSVGQRAKLIISPDYAYGATGHPGI-IPPHATLVFDVELLKLE 108          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB1A_MOUSE (Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Mus musculus GN=Fkbp1a PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.796e-16
Identity = 49/113 (43.36%), Postives = 73/113 (64.60%), Query Frame = -1
Query:  203 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 538
            MG++ + ++PG+G   P  GQ   VH TG  ++G   +KF S +D  + PF F +GK  VI+GW+EGV  M VG+ A+L  S DYAYGA G P   I P++ L F++++L++E
Sbjct:    1 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRDRNK-PFKFTLGKQEVIRGWEEGVAQMSVGQRAKLIISSDYAYGATGHPGI-IPPHATLVFDVELLKLE 108          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP5_AOTNA (FK506-binding protein 5 OS=Aotus nancymaae GN=FKBP5 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.652e-16
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = -1
Query:  212 TEKEMGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGA-GGFPQWGIQPNSVLDFEIQVL 550
            ++K+ G+ K +   G+G + P+ G KV VH  G   NG   +KF S  D  + PF F IGKG VIK WD GV  M+ GE+  L C P+YAYGA G  P+  I  N+ L FEI++L
Sbjct:   27 SKKDRGVLKIVKRVGHGEETPMIGDKVYVHYNGKLSNG---KKFDSSHDRNE-PFVFSIGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGATGSLPK--IPSNATLFFEIELL 135          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP5_SAGOE (FK506-binding protein 5 OS=Saguinus oedipus GN=FKBP5 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 4.769e-16
Identity = 51/115 (44.35%), Postives = 69/115 (60.00%), Query Frame = -1
Query:  212 TEKEMGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGA-GGFPQWGIQPNSVLDFEIQVL 550
            ++K+ G+ K +   G+G + P+ G KV VH  G   NG   +KF S  D  + PF F IGKG VIK WD GV  M+ GE+  L C P+YAYGA G  P+  I  N+ L FE+++L
Sbjct:   27 SKKDRGVLKIVKRVGHGEETPMIGDKVYVHYNGKLSNG---KKFDSSHDRNE-PFVFSIGKGQVIKAWDIGVSTMKKGEICHLLCKPEYAYGATGSLPK--IPSNATLFFEVELL 135          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP_YEAST (FK506-binding protein 1 OS=Saccharomyces cerevisiae GN=FPR1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.062e-15
Identity = 51/105 (48.57%), Postives = 63/105 (60.00%), Query Frame = -1
Query:  206 LTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 517
            ++PG+G   P  G  VT+H TG  +NG   QKF S  D G  PF   IG G VIKGWD G+  + VGE ARL     YAYG  GFP   I PNS L F++++L+V
Sbjct:   14 ISPGDGATFPKTGDLVTIHYTGTLENG---QKFDSSVDRGS-PFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGL-IPPNSTLVFDVELLKV 113          
The following BLAST results are available for this feature:
BLAST of CB304941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FKB1B_RABIT5.634e-1745.13Peptidyl-prolyl cis-trans isomerase FKBP1B OS=Oryc... [more]
FKBP4_USTMA9.609e-1740.63FK506-binding protein 4 OS=Ustilago maydis GN=FPR4... [more]
FKBP5_PONAB2.141e-1645.22FK506-binding protein 5 OS=Pongo abelii GN=FKBP5 P... [more]
FKBP5_HUMAN2.141e-1645.22FK506-binding protein 5 OS=Homo sapiens GN=FKBP5 P... [more]
FKBP_CANGA2.796e-1646.90FK506-binding protein 1 OS=Candida glabrata GN=FPR... [more]
FKB1A_RAT2.796e-1643.36Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Ratt... [more]
FKB1A_MOUSE2.796e-1643.36Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Mus ... [more]
FKBP5_AOTNA3.652e-1645.22FK506-binding protein 5 OS=Aotus nancymaae GN=FKBP... [more]
FKBP5_SAGOE4.769e-1644.35FK506-binding protein 5 OS=Saguinus oedipus GN=FKB... [more]
FKBP_YEAST1.062e-1548.57FK506-binding protein 1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304941 ID=CB304941; Name=CB304941; organism=Citrus sinensis; type=EST; length=589bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAAAAAGTTGCACATGTA
GTGTTATTAAAACGTCGAAAAAAAAATCGTTCCAACATATCCATCTGATA
TTTATCAGGAGTTCAGGATAACATACATACATGTCCATGGTAAGACAATT
TATTTAAAACCATAAAATTTCTAGATGGTTTTCTGCCTTTATGAGGTGCT
TATTCTACCTGCAGGACTTGTATCTCGAAATCCAGGACTGAGTTAGGTTG
AATCCCCCATTGTGGAAATCCACCAGCACCATAGGCGTAATCTGGGGAGC
ACCGCAGACGAGCAACTTCTCCCACCTGCATTCCCATCACGCCTTCATCC
CATCCTTTTATAACAGAGCCTTTGCCAATCTGGAATGTAAAAGGCTGCTG
CCCAGGGTCCTTTGGGCTCCAGAACTTCTGAGACAGATCGCCATTTTTCC
CGTAGCCAGTGCAGTGGACGGTAACCTTCTGACCAGCAACCGGCTTAGGA
CCGTTTCCTGGGGTCAAAATTTGCTTCTCTATTCCCATCTCCTTCTCTGT
CTTAGGGTTTTTGACTTTCTGGTAACTCTTTTTAATCCC
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