CB304941

Overview
NameCB304941
Unique NameCB304941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304941_ssr121 microsatellite CB304941_ssr121:121..132. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6967 contig Csv1_Contig6967:59..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP_YARLI (FK506-binding protein 1 OS=Yarrowia lipolytica GN=FPR1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.062e-15
Identity = 50/112 (44.64%), Postives = 67/112 (59.82%), Query Frame = -1
Query:  206 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 538
            MG+  + L PG+G   P  G  VT+H  G  +NG   QKF S +D G+ PF   IG G VI+GWDEGV  + +GE + L  S DY YG  GFP   I PN+ L F++++L +
Sbjct:    1 MGVTVKQLQPGDGKTYPKKGDAVTIHYVGTLENG---QKFDSSRDRGE-PFKTTIGVGDVIRGWDEGVPKLSLGERSVLTISGDYGYGERGFPGL-IPPNATLVFDVELLGI 107          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP5_SAIBB (FK506-binding protein 5 OS=Saimiri boliviensis boliviensis GN=FKBP5 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.388e-15
Identity = 50/115 (43.48%), Postives = 69/115 (60.00%), Query Frame = -1
Query:  212 TEKEMGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGA-GGFPQWGIQPNSVLDFEIQVL 550
            ++K+ G+ K +   G+G + P+ G +V VH  G   NG   +KF S  D  + PF F IGKG VIK WD GV  M+ GE+  L C P+YAYGA G  P+  I  N+ L FE+++L
Sbjct:   27 SKKDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANG---KKFDSSHDRNE-PFVFSIGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGATGSLPK--IPSNATLFFEVELL 135          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP5_CERAE (FK506-binding protein 5 OS=Cercopithecus aethiops GN=FKBP5 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.388e-15
Identity = 51/115 (44.35%), Postives = 68/115 (59.13%), Query Frame = -1
Query:  212 TEKEMGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYG-AGGFPQWGIQPNSVLDFEIQVL 550
            ++K+ G+ K +   GNG + P+ G KV VH  G   NG   +KF S  D  + PF F +GK  VIK WD GV  M+ GE+  L C P+YAYG AG  P+  I  N+ L FEI++L
Sbjct:   27 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNG---KKFNSSHDRNE-PFVFSLGKSQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSVPK--IPSNATLFFEIELL 135          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP4_MOUSE (FK506-binding protein 4 OS=Mus musculus GN=Fkbp4 PE=1 SV=5)

HSP 1 Score: 82.4185 bits (202), Expect = 1.812e-15
Identity = 48/114 (42.11%), Postives = 68/114 (59.65%), Query Frame = -1
Query:  209 EKEMGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQ 547
            +++ G+ K I   G G + P+ G +V VH TG+  +G    KF S  D  +  F+F +GKG VIK WD  V  M+VGEV  + C P+YAYGA G P   I PN+ L FE+++ +
Sbjct:   28 KQDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGT---KFDSSLDR-KDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGAAGSPP-KIPPNATLVFEVELFE 136          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP4_RABIT (FK506-binding protein 4 OS=Oryctolagus cuniculus GN=FKBP4 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.367e-15
Identity = 47/114 (41.23%), Postives = 69/114 (60.53%), Query Frame = -1
Query:  209 EKEMGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQ 547
            +++ G+ K I   G G + P+ G +V VH TG+  +G    KF S  D  +  F+F +GKG VIK WD  V  M+VGE+ R+ C P+YAYG+ G P   I PN+ L FE+++ +
Sbjct:   28 KQDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGT---KFDSSLDR-KDKFSFDLGKGEVIKAWDIAVATMKVGELCRITCKPEYAYGSAGSPP-KIPPNATLVFEVELFE 136          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP4_HUMAN (FK506-binding protein 4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 5.273e-15
Identity = 46/114 (40.35%), Postives = 68/114 (59.65%), Query Frame = -1
Query:  209 EKEMGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQ 547
            +++ G+ K I   G G + P+ G +V VH TG+  +G    KF S  D  +  F+F +GKG VIK WD  +  M+VGEV  + C P+YAYG+ G P   I PN+ L FE+++ +
Sbjct:   28 KQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGT---KFDSSLDR-KDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPP-KIPPNATLVFEVELFE 136          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP4_BOVIN (FK506-binding protein 4 OS=Bos taurus GN=FKBP4 PE=1 SV=4)

HSP 1 Score: 80.1073 bits (196), Expect = 8.994e-15
Identity = 47/114 (41.23%), Postives = 67/114 (58.77%), Query Frame = -1
Query:  209 EKEMGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQ 547
            +++ G+ K I   G G + P+ G +V VH TG+  +G    KF S  D   + F+F +GKG VIK WD  V  M+VGEV  + C P+YAYG  G P   I PN+ L FE+++ +
Sbjct:   28 KQDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGT---KFDSSLDRKDR-FSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGLAGSPP-KIPPNATLVFEVELFE 136          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP_KLULA (FK506-binding protein 1 OS=Kluyveromyces lactis GN=FPR1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.534e-14
Identity = 51/107 (47.66%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  206 LTPG---NGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 517
            L+PG   N PKP  G  VT+H TG  +NG   QKF S  D G  PF   IG G VIKGWD  +  + VGE ARL     YAYG  GFP   I PN+ L F++++L++
Sbjct:   14 LSPGDSTNFPKP--GDLVTIHYTGTLENG---QKFDSSVDRGS-PFQCNIGVGQVIKGWDAAIPKLSVGEKARLTIPGPYAYGPRGFPGL-IPPNATLVFDVELLKI 113          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP5_MOUSE (FK506-binding protein 5 OS=Mus musculus GN=Fkbp5 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.534e-14
Identity = 48/114 (42.11%), Postives = 67/114 (58.77%), Query Frame = -1
Query:  212 TEKEMGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVL 550
            T+K+ G+ K +   G   + P+ G KV VH  G   +G   +KF S  D  ++PF F +G+G VIK WD GV  M+ GE+  L C P+YAYG+ G  Q  I  N+ L FEI++L
Sbjct:   27 TKKDRGVLKIVKRVGTSDEAPMFGDKVYVHYKGMLSDG---KKFDSSHDR-KKPFAFSLGQGQVIKAWDIGVSTMKKGEICHLLCKPEYAYGSAGHLQ-KIPSNATLFFEIELL 135          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP_ASHGO (FK506-binding protein 1 OS=Ashbya gossypii GN=FPR1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.004e-14
Identity = 50/105 (47.62%), Postives = 61/105 (58.10%), Query Frame = -1
Query:  206 LTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 517
            L+PG+G   P  G  VT+H TG  +N    QKF S  D G  PF   IG G VIKGWD  +  + VGE ARL     YAYG  GFP   I PN+ L FE+++L+V
Sbjct:   14 LSPGDGKTFPKTGDLVTIHYTGTLEN---EQKFDSSVDRGS-PFQCNIGVGQVIKGWDVAIPKLSVGEKARLTIPGAYAYGPRGFPGL-IPPNATLIFEVELLKV 113          
The following BLAST results are available for this feature:
BLAST of CB304941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FKBP_YARLI1.062e-1544.64FK506-binding protein 1 OS=Yarrowia lipolytica GN=... [more]
FKBP5_SAIBB1.388e-1543.48FK506-binding protein 5 OS=Saimiri boliviensis bol... [more]
FKBP5_CERAE1.388e-1544.35FK506-binding protein 5 OS=Cercopithecus aethiops ... [more]
FKBP4_MOUSE1.812e-1542.11FK506-binding protein 4 OS=Mus musculus GN=Fkbp4 P... [more]
FKBP4_RABIT2.367e-1541.23FK506-binding protein 4 OS=Oryctolagus cuniculus G... [more]
FKBP4_HUMAN5.273e-1540.35FK506-binding protein 4 OS=Homo sapiens GN=FKBP4 P... [more]
FKBP4_BOVIN8.994e-1541.23FK506-binding protein 4 OS=Bos taurus GN=FKBP4 PE=... [more]
FKBP_KLULA1.534e-1447.66FK506-binding protein 1 OS=Kluyveromyces lactis GN... [more]
FKBP5_MOUSE1.534e-1442.11FK506-binding protein 5 OS=Mus musculus GN=Fkbp5 P... [more]
FKBP_ASHGO2.004e-1447.62FK506-binding protein 1 OS=Ashbya gossypii GN=FPR1... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304941 ID=CB304941; Name=CB304941; organism=Citrus sinensis; type=EST; length=589bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAAAAAGTTGCACATGTA
GTGTTATTAAAACGTCGAAAAAAAAATCGTTCCAACATATCCATCTGATA
TTTATCAGGAGTTCAGGATAACATACATACATGTCCATGGTAAGACAATT
TATTTAAAACCATAAAATTTCTAGATGGTTTTCTGCCTTTATGAGGTGCT
TATTCTACCTGCAGGACTTGTATCTCGAAATCCAGGACTGAGTTAGGTTG
AATCCCCCATTGTGGAAATCCACCAGCACCATAGGCGTAATCTGGGGAGC
ACCGCAGACGAGCAACTTCTCCCACCTGCATTCCCATCACGCCTTCATCC
CATCCTTTTATAACAGAGCCTTTGCCAATCTGGAATGTAAAAGGCTGCTG
CCCAGGGTCCTTTGGGCTCCAGAACTTCTGAGACAGATCGCCATTTTTCC
CGTAGCCAGTGCAGTGGACGGTAACCTTCTGACCAGCAACCGGCTTAGGA
CCGTTTCCTGGGGTCAAAATTTGCTTCTCTATTCCCATCTCCTTCTCTGT
CTTAGGGTTTTTGACTTTCTGGTAACTCTTTTTAATCCC
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