CB304941

Overview
NameCB304941
Unique NameCB304941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304941_ssr121 microsatellite CB304941_ssr121:121..132. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6967 contig Csv1_Contig6967:59..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB1B_ASPFU (FK506-binding protein 1B OS=Aspergillus fumigatus GN=fpr1B PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.004e-14
Identity = 51/118 (43.22%), Postives = 67/118 (56.78%), Query Frame = -1
Query:  203 MGIEKQILTPGNGPK-PVAGQKVTVHCTGY-----GKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 538
            MG+EKQ L  GNG   P  G  V ++ TGY       +    ++F S K  G  P    IG G VI+GWDEGV  M +GE A L  S +YAYG  GFP   I PN+ L FE+++L+++
Sbjct:    1 MGLEKQTLRMGNGKDHPQPGDPVELNYTGYLYDESNPDHHKGKEFDSSKRRG--PLKATIGAGDVIRGWDEGVRQMSLGEKAILTMSGEYAYGEKGFPGL-IPPNASLVFEVELLKIK 115          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP4_RAT (FK506-binding protein 4 OS=Rattus norvegicus GN=Fkbp4 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 3.418e-14
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = -1
Query:  209 EKEMGIEKQILTPGNGPKP-VAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQ 547
            +++ G+ K I   G G +  + G +V VH TG+  +G    KF S  D  +  F+F +GKG VIK WD  V  M+VGEV  + C P+YAYG+ G P   I PN+ L FE+++ +
Sbjct:   28 KQDEGVLKVIKREGTGTETAMIGDRVFVHYTGWLLDGT---KFDSSLDR-KDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGSAGSPP-KIPPNATLVFEVELFE 136          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP3_CANGA (FK506-binding protein 3 OS=Candida glabrata GN=FPR3 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.464e-14
Identity = 48/131 (36.64%), Postives = 68/131 (51.91%), Query Frame = -1
Query:  203 KKSYQKVKNPKTEKEMGIEKQIL----TPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 583
            K+  +  K  KT K   +E  ++    T G+GP    G +V +   G  KNG +  K  S K     PF F++G+G VIKGWD GV GM VG   R+     YAYG    P  GI  NS L F+++++ ++
Sbjct:  314 KEKAESKKADKTPKRRTLEGGVVIEDRTVGDGPAAKKGDRVGMRYIGKLKNGKVFDKNTSGK-----PFVFKLGRGEVIKGWDVGVAGMSVGSERRIIIPAPYAYGKQALP--GIPANSELTFDVKLVSIK 437          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB1B_NEUCR (Peptidyl-prolyl cis-trans isomerase fkr-3 OS=Neurospora crassa GN=fkr-3 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.830e-14
Identity = 48/107 (44.86%), Postives = 60/107 (56.07%), Query Frame = -1
Query:  221 MGIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDP-GQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEI 538
            MG+ K     G GP+P AGQ V +  TG+ K  D SQ      D  G+  F  QIG G +I+GWDE V+ M+VGE A L  S DY YG  GF    I PN+ L F++
Sbjct:    1 MGVNKITHVAGTGPQPEAGQTVVIEYTGWLK--DSSQADGKGADSIGRGDFVTQIGVGRLIRGWDEAVLKMKVGEKATLDISSDYGYGERGF-HGHIPPNADLIFDV 104          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP3_YEAST (FK506-binding nuclear protein OS=Saccharomyces cerevisiae GN=FPR3 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 7.614e-14
Identity = 49/127 (38.58%), Postives = 66/127 (51.97%), Query Frame = -1
Query:  203 KKSYQKVKNPKTEKEMGIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 583
            KK   K K      E GI  +  T G+GP+   G +V +   G  KNG +  K  S K     PF F++G+G VIKGWD GV GM VG   R+     YAYG    P  GI  NS L F+++++ ++
Sbjct:  291 KKEQDKHKPKSKVLEGGIVIEDRTIGDGPQAKRGARVGMRYIGKLKNGKVFDKNTSGK-----PFAFKLGRGEVIKGWDIGVAGMSVGGERRIIIPAPYAYGKQALP--GIPANSELTFDVKLVSMK 410          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP3_YARLI (FK506-binding protein 3 OS=Yarrowia lipolytica GN=FPR3 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.215e-13
Identity = 49/129 (37.98%), Postives = 65/129 (50.39%), Query Frame = -1
Query:  203 GIKKSYQKVKNPKTEKEMGIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 589
            G   S  K K    + E G++ +  T G GP    G KV V   G   NG    K +     G+ PF F +GKG VI+GWD GV GM+V    R+   P  AYG    P  GI PNS L F+++V+ ++
Sbjct:  286 GPTPSEPKPKLVTRQLEGGVKIEDRTVGEGPSAKVGSKVGVRYVGKLANG----KVFDSNSKGK-PFYFSVGKGEVIRGWDIGVQGMKVKGERRIIIPPGMAYGKQKLP--GIPPNSQLTFDVKVVNIK 407          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB59_DROME (FK506-binding protein 59 OS=Drosophila melanogaster GN=FKBP59 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.779e-13
Identity = 45/109 (41.28%), Postives = 65/109 (59.63%), Query Frame = -1
Query:  212 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVL 535
            G+ K+IL  G G + P +G  V++H TG   +G       S  +P    F F +GKG+VIK +D GV  M++GE   L C+P+YAYGA G P   I P++ L FE+++L
Sbjct:   14 GVLKEILKEGTGTETPHSGCTVSLHYTGRLVDGTEFDSSLSRNEP----FEFSLGKGNVIKAFDMGVATMKLGERCFLTCAPNYAYGAAGSPP-AIPPDATLIFELEML 117          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP3_RABIT (FK506-binding protein 3 OS=Oryctolagus cuniculus GN=FKBP3 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.935e-13
Identity = 50/147 (34.01%), Postives = 75/147 (51.02%), Query Frame = -1
Query:  203 IKKSYQKVKNPKTEKEMGIE-KQILTPGNGPKPVA------GQKVT-------VHC--TGYGKNG---DLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 586
            + K  ++VKN K  ++   E K   TP  GP          G K         VHC  TG  ++G   D + +  S K    +P +F++G G VI+GWDE ++ M  GE ARL   P++AYG  G P   I PN+ L FE++++ ++
Sbjct:   78 VTKVSEQVKNVKLNEDKPKETKSEETPDEGPPKYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLIFEVELVDID 224          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB2B_RHIOR (FK506-binding protein 2B OS=Rhizopus oryzae GN=FKBP3 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.935e-13
Identity = 45/129 (34.88%), Postives = 73/129 (56.59%), Query Frame = -1
Query:  203 IKKSYQKVKNPKTEKEMGIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQP-NSVLDFEIQVLQVE 586
            +  S   +K P T+ ++G++K+I       K  +G ++++H TG     D  +KF S  D  + PF F +G G VI+GWD+G++GM VGE  RL   P   YG  G    G+ P  + L FE+++L+++
Sbjct:   13 VATSVSALKEPPTQLQVGVKKRIPASECTRKSHSGDELSMHYTG--TLFDTGEKFDSSLDRNE-PFVFTLGAGQVIQGWDQGLLGMCVGEKRRLVIPPHLGYGERG--AGGVIPGGATLVFEVELLEIK 136          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP4_YEAST (FK506-binding protein 4 OS=Saccharomyces cerevisiae GN=FPR4 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.446e-13
Identity = 48/129 (37.21%), Postives = 66/129 (51.16%), Query Frame = -1
Query:  203 IKKSYQKVKNPKTEK-EMGIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 586
            +K S +    PKT+  E GI  +    G GP    G +V +   G  KNG +  K    K     PF F++G+G VIKGWD GV GM VG   R+     YAYG    P  GI  NS L F+++++ ++
Sbjct:  271 VKDSEESKPKPKTKLLEGGIIIEDRVTGKGPHAKKGTRVGMRYVGKLKNGKVFDKNTKGK-----PFVFKLGQGEVIKGWDIGVAGMAVGGERRIVIPAPYAYGKQALP--GIPANSELTFDVKLVSMK 392          
The following BLAST results are available for this feature:
BLAST of CB304941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FKB1B_ASPFU2.004e-1443.22FK506-binding protein 1B OS=Aspergillus fumigatus ... [more]
FKBP4_RAT3.418e-1440.35FK506-binding protein 4 OS=Rattus norvegicus GN=Fk... [more]
FKBP3_CANGA4.464e-1436.64FK506-binding protein 3 OS=Candida glabrata GN=FPR... [more]
FKB1B_NEUCR5.830e-1444.86Peptidyl-prolyl cis-trans isomerase fkr-3 OS=Neuro... [more]
FKBP3_YEAST7.614e-1438.58FK506-binding nuclear protein OS=Saccharomyces cer... [more]
FKBP3_YARLI2.215e-1337.98FK506-binding protein 3 OS=Yarrowia lipolytica GN=... [more]
FKB59_DROME3.779e-1341.28FK506-binding protein 59 OS=Drosophila melanogaste... [more]
FKBP3_RABIT4.935e-1334.01FK506-binding protein 3 OS=Oryctolagus cuniculus G... [more]
FKB2B_RHIOR4.935e-1334.88FK506-binding protein 2B OS=Rhizopus oryzae GN=FKB... [more]
FKBP4_YEAST6.446e-1337.21FK506-binding protein 4 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304941 ID=CB304941; Name=CB304941; organism=Citrus sinensis; type=EST; length=589bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAAAAAGTTGCACATGTA
GTGTTATTAAAACGTCGAAAAAAAAATCGTTCCAACATATCCATCTGATA
TTTATCAGGAGTTCAGGATAACATACATACATGTCCATGGTAAGACAATT
TATTTAAAACCATAAAATTTCTAGATGGTTTTCTGCCTTTATGAGGTGCT
TATTCTACCTGCAGGACTTGTATCTCGAAATCCAGGACTGAGTTAGGTTG
AATCCCCCATTGTGGAAATCCACCAGCACCATAGGCGTAATCTGGGGAGC
ACCGCAGACGAGCAACTTCTCCCACCTGCATTCCCATCACGCCTTCATCC
CATCCTTTTATAACAGAGCCTTTGCCAATCTGGAATGTAAAAGGCTGCTG
CCCAGGGTCCTTTGGGCTCCAGAACTTCTGAGACAGATCGCCATTTTTCC
CGTAGCCAGTGCAGTGGACGGTAACCTTCTGACCAGCAACCGGCTTAGGA
CCGTTTCCTGGGGTCAAAATTTGCTTCTCTATTCCCATCTCCTTCTCTGT
CTTAGGGTTTTTGACTTTCTGGTAACTCTTTTTAATCCC
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