CB304941

Overview
NameCB304941
Unique NameCB304941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304941_ssr121 microsatellite CB304941_ssr121:121..132. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6967 contig Csv1_Contig6967:59..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP3_MOUSE (FK506-binding protein 3 OS=Mus musculus GN=Fkbp3 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 8.418e-13
Identity = 47/137 (34.31%), Postives = 72/137 (52.55%), Query Frame = -1
Query:  203 IKKSYQKVKNPKTEKEMG-----IEKQILTPGNGPK-PVAGQKVTVHCTGYGKNG---DLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 586
            +K S  K K+ K+E+ +        K IL  G+    P  G  V    TG   +G   D + +  S K    +P +F++G G VI+GWDE ++ M  GE ARL   P++AYG  G P   I PN+ L FE++++ ++
Sbjct:   88 VKLSDDKPKDSKSEETLDEGPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDID 224          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP3_KLULA (FK506-binding protein 3 OS=Kluyveromyces lactis GN=FPR3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.418e-13
Identity = 49/128 (38.28%), Postives = 66/128 (51.56%), Query Frame = -1
Query:  203 KKSYQKVKNPKTEK-EMGIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 583
            +K  +K + PKT+  E GI  +    G G     G KV +   G  KNG +  K  S K     PF F +G+G VIKGWD GV GM VG   R+     YAYG    P  GI  NS L F+++++ ++
Sbjct:  298 EKKEEKKEKPKTKVLEGGIIIEDRVTGKGKACKKGSKVGMRYIGKLKNGKVFDKNTSGK-----PFVFNLGRGEVIKGWDIGVAGMAVGGERRIVIPAPYAYGKQALP--GIPANSELTFDVKLVSLK 418          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP3_HUMAN (FK506-binding protein 3 OS=Homo sapiens GN=FKBP3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.875e-12
Identity = 44/137 (32.12%), Postives = 72/137 (52.55%), Query Frame = -1
Query:  203 IKKSYQKVKNPKTEKEMG-----IEKQILTPGNGPK-PVAGQKVTVHCTGYGKNG---DLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 586
            +K +  K K  K+E+ +        K +L  G+    P  G  V    TG  ++G   D + +  + K    +P +F++G G VI+GWDE ++ M  GE ARL   P++AYG  G P   I PN+ L FE++++ ++
Sbjct:   88 VKLNEDKPKETKSEETLDEGPPKYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDID 224          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP3_BOVIN (FK506-binding protein 3 OS=Bos taurus GN=FKBP3 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.875e-12
Identity = 45/137 (32.85%), Postives = 72/137 (52.55%), Query Frame = -1
Query:  203 IKKSYQKVKNPKTEKEMG-----IEKQILTPGNGPK-PVAGQKVTVHCTGYGKNG---DLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 586
            +K +  K K  K+E+ +        K +L  G+    P  G  V    TG  ++G   D + +  S K    +P +F++G G VI+GWDE ++ M  GE ARL   P++AYG  G P   I PN+ L FE++++ ++
Sbjct:   88 VKLNEDKPKETKSEETLDEGPPKYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSSKKKKNAKPLSFKVGIGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLIFEVELVDID 224          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB70_WHEAT (70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.875e-12
Identity = 43/111 (38.74%), Postives = 64/111 (57.66%), Query Frame = -1
Query:  212 EMGIEKQILTPGNG-PKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVL 541
            + G++K++L  G G   P  G +V VH TG   +G   +KF S +D     F F++G+G VIKGWD+G+  M+ GE A     P+ AYG  G P   I  N+ L F++++L
Sbjct:   40 KQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDG---KKFDSSRDR-DDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPP-TIPANATLQFDVELL 145          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP4_EMENI (FK506-binding protein 4 OS=Emericella nidulans GN=fpr4 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.199e-12
Identity = 42/102 (41.18%), Postives = 57/102 (55.88%), Query Frame = -1
Query:  203 GNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 508
            G GP   +G  V +   G  +NG    K +     G+ PFTF++GKG VIKGWD GV GM VG   R+      AYG  G P  GI  NS L F++++L+++
Sbjct:  384 GKGPAAASGNTVAMRYIGKLENG----KVFDSNKKGK-PFTFKLGKGEVIKGWDIGVAGMAVGGERRITIPSHLAYGKKGVP--GIPGNSKLIFDVKLLEIK 478          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP4_CANGA (FK506-binding protein 4 OS=Candida glabrata GN=FPR4 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.199e-12
Identity = 46/131 (35.11%), Postives = 67/131 (51.15%), Query Frame = -1
Query:  203 KKSYQKVKNPKTEKEMGIEKQILTP----GNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 583
            +K+ +  +N K  K   +E  ++      G GPK   G KV +   G  KNG +  K  S K     PF F++ +G VIKGWD GV GM +G   R+     YAYG    P  GI  NS L F+++++ ++
Sbjct:  275 EKNTKATENEKKNKAQVLEGGVIIEDRKIGEGPKAKKGSKVGMRYIGKLKNGKVFDKNTSGK-----PFYFKLHRGEVIKGWDIGVTGMAIGGERRIVIPAPYAYGKQTLP--GIPANSELTFDVKLVSLK 398          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP_NEIMB (FK506-binding protein OS=Neisseria meningitidis serogroup B GN=fbp PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.178e-12
Identity = 45/110 (40.91%), Postives = 64/110 (58.18%), Query Frame = -1
Query:  206 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 535
            G+  + L  G G + V G+++TVH TG+ +NG    KF S  D  +QP T  +G G VIKGWDEG  GM+ G   +L    +  YGA G     I P++ L FE+++L+V
Sbjct:    3 GLIIEDLQEGFGKEAVKGKEITVHYTGWLENGT---KFDSSLDR-RQPLTITLGVGQVIKGWDEGFGGMKEGGKRKLTIPSEMGYGAHG-AGGVIPPHATLIFEVELLKV 107          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP_DEBHA (FK506-binding protein 1 OS=Debaryomyces hansenii GN=FPR1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.178e-12
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = -1
Query:  206 QILTPGNG---PKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 523
            +IL  G+G   PKP  G  VT+H TG  +NG   +KF S +D G+ PF   IG G VI GWD G+  + VG  A+L      AYG  GFP   I PN+ L F++++L V
Sbjct:   10 EILQEGDGKTFPKP--GDLVTIHYTGTLENG---KKFDSSRDRGK-PFQCTIGVGQVIVGWDTGIPKLSVGSRAKLSIPGHEAYGDRGFPGL-IPPNATLLFDVELLNV 111          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP4_GIBZE (FK506-binding protein 4 OS=Gibberella zeae GN=FPR4 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.178e-12
Identity = 44/111 (39.64%), Postives = 61/111 (54.95%), Query Frame = -1
Query:  203 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 535
            G+     T GNG    +G  V V   G  +NG    K +     G+ PF+F+ GKG VIKGWD GV+GM +G   RL      AYG+ G P  GI  NS L F++++L+++
Sbjct:  392 GVTVDDRTVGNGRTVKSGDTVGVRYIGKLQNG----KQFDANKKGK-PFSFKAGKGQVIKGWDIGVIGMAIGGERRLTIPAHLAYGSRGLP--GIPANSTLIFDVKLLEIK 495          
The following BLAST results are available for this feature:
BLAST of CB304941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FKBP3_MOUSE8.418e-1334.31FK506-binding protein 3 OS=Mus musculus GN=Fkbp3 P... [more]
FKBP3_KLULA8.418e-1338.28FK506-binding protein 3 OS=Kluyveromyces lactis GN... [more]
FKBP3_HUMAN1.875e-1232.12FK506-binding protein 3 OS=Homo sapiens GN=FKBP3 P... [more]
FKBP3_BOVIN1.875e-1232.85FK506-binding protein 3 OS=Bos taurus GN=FKBP3 PE=... [more]
FKB70_WHEAT1.875e-1238.7470 kDa peptidyl-prolyl isomerase OS=Triticum aesti... [more]
FKBP4_EMENI3.199e-1241.18FK506-binding protein 4 OS=Emericella nidulans GN=... [more]
FKBP4_CANGA3.199e-1235.11FK506-binding protein 4 OS=Candida glabrata GN=FPR... [more]
FKBP_NEIMB4.178e-1240.91FK506-binding protein OS=Neisseria meningitidis se... [more]
FKBP_DEBHA4.178e-1244.04FK506-binding protein 1 OS=Debaryomyces hansenii G... [more]
FKBP4_GIBZE4.178e-1239.64FK506-binding protein 4 OS=Gibberella zeae GN=FPR4... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304941 ID=CB304941; Name=CB304941; organism=Citrus sinensis; type=EST; length=589bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAAAAAGTTGCACATGTA
GTGTTATTAAAACGTCGAAAAAAAAATCGTTCCAACATATCCATCTGATA
TTTATCAGGAGTTCAGGATAACATACATACATGTCCATGGTAAGACAATT
TATTTAAAACCATAAAATTTCTAGATGGTTTTCTGCCTTTATGAGGTGCT
TATTCTACCTGCAGGACTTGTATCTCGAAATCCAGGACTGAGTTAGGTTG
AATCCCCCATTGTGGAAATCCACCAGCACCATAGGCGTAATCTGGGGAGC
ACCGCAGACGAGCAACTTCTCCCACCTGCATTCCCATCACGCCTTCATCC
CATCCTTTTATAACAGAGCCTTTGCCAATCTGGAATGTAAAAGGCTGCTG
CCCAGGGTCCTTTGGGCTCCAGAACTTCTGAGACAGATCGCCATTTTTCC
CGTAGCCAGTGCAGTGGACGGTAACCTTCTGACCAGCAACCGGCTTAGGA
CCGTTTCCTGGGGTCAAAATTTGCTTCTCTATTCCCATCTCCTTCTCTGT
CTTAGGGTTTTTGACTTTCTGGTAACTCTTTTTAATCCC
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