CB304941

Overview
NameCB304941
Unique NameCB304941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304941_ssr121 microsatellite CB304941_ssr121:121..132. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6967 contig Csv1_Contig6967:59..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP4_ASPOR (FK506-binding protein 4 OS=Aspergillus oryzae GN=fpr4 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.178e-12
Identity = 42/102 (41.18%), Postives = 57/102 (55.88%), Query Frame = -1
Query:  203 GNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 508
            G GP   AG  V +   G  ++G    K +     G+ PFTF++GKG VIKGWD GV GM VG   R+   P  AYG    P  GI  NS L F++++L+++
Sbjct:  376 GKGPAAKAGNTVAMRYIGKLEDG----KVFDANKKGK-PFTFKLGKGEVIKGWDIGVAGMAVGGERRISIPPHLAYGKKALP--GIPGNSKLIFDVKLLEIK 470          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP4_ASPFU (FK506-binding protein 4 OS=Aspergillus fumigatus GN=fpr4 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.178e-12
Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = -1
Query:  203 GNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 508
            G GP   AG  V +   G  ++G    K +     G+ PFTF++GKG VIKGWD G+ GM VG   R+   P  AYG    P  GI  NS L F++++L+++
Sbjct:  395 GKGPAAKAGNTVAMRYIGKLEDG----KVFDANKKGK-PFTFKLGKGEVIKGWDIGIAGMAVGGERRITIPPHLAYGKKALP--GIPANSKLIFDVKLLEIK 489          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP_NEIMA (FK506-binding protein OS=Neisseria meningitidis serogroup A GN=fbp PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.457e-12
Identity = 44/104 (42.31%), Postives = 61/104 (58.65%), Query Frame = -1
Query:  206 LTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 517
            L  G G + V G+++TVH TG+ +NG    KF S  D  +QP T  +G G VIKGWDEG  GM+ G   +L    +  YGA G     I P++ L FE+++L+V
Sbjct:    9 LQEGFGKEAVKGKEITVHYTGWLENGT---KFDSSLDR-RQPLTITLGVGQVIKGWDEGFGGMKEGGKRKLTIPSEMGYGARG-AGGVIPPHATLIFEVELLKV 107          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP4_DICDI (FK506-binding protein 4 OS=Dictyostelium discoideum GN=fkbp4 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.457e-12
Identity = 42/108 (38.89%), Postives = 58/108 (53.70%), Query Frame = -1
Query:  212 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVL 535
            G++ + L  G+GP P +G+KV V   G   NG             + PFTF+IG   VI+GWD GV  M+VG   RL    D AYG  G P   I PN+ L F+++++
Sbjct:  260 GLQYEDLVVGSGPSPKSGKKVGVKYIGKLTNGKTFDSSL------RTPFTFRIGIREVIRGWDIGVASMKVGGKRRLTIPADLAYGRSGAPP-SIPPNATLIFDVELV 360          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB70_ARATH (70 kDa peptidyl-prolyl isomerase OS=Arabidopsis thaliana GN=ROF1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.127e-12
Identity = 48/124 (38.71%), Postives = 69/124 (55.65%), Query Frame = -1
Query:  209 SYQKVKNPKTEKEMGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQ 577
            S+ KV   K E + G++K++L  G G + P  G +V VH TG   +G    KF S +D    PF F +G+G VIKGWD G+  M+ GE A      + AYG  G P   I  N+ L F++++L+
Sbjct:   26 SFLKVGEEK-EIQQGLKKKLLKEGEGYETPENGDEVEVHYTGTLLDGT---KFDSSRDRAT-PFKFTLGQGQVIKGWDIGIKTMKKGENAVFTIPAELAYGESGSPP-TIPANATLQFDVELLK 143          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP2_DICDI (FK506-binding protein 2 OS=Dictyostelium discoideum GN=fkbp2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.216e-11
Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = -1
Query:  206 KPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 496
            K  +G K+ +H TG   NGD   KF S  D G  PF F+IG G VIKGWD+GV+GM VGE  +L   P   YG  G     I  NS L F+++++ +
Sbjct:   41 KTKSGDKLKIHYTGTLLNGD---KFDSSVDRGT-PFEFKIGVGQVIKGWDQGVLGMCVGEKRKLIIPPSLGYGQQGAGD-KIPGNSHLIFDVELIGI 132          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP5_RHIOR (FK506-binding protein 5 OS=Rhizopus oryzae GN=FKBP5 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.588e-11
Identity = 40/108 (37.04%), Postives = 62/108 (57.41%), Query Frame = -1
Query:  212 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVL 535
            G+ K+I+  G G +P     V+VH   Y    D S+KF S +D   + FTFQ+    VI+ W+  +  MQVGE+A + C+ DY YG  G  Q+ + P + L FE++++
Sbjct:    9 GVTKRIIKAGLGQRPEPTNFVSVHYDAYLL--DTSEKFDSSRDRNTE-FTFQLRDSKVIEAWELAIPTMQVGELAEIICTSDYGYGDQG-RQYIVPPRAQLRFEVELI 112          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP3_ASHGO (FK506-binding protein 3 OS=Ashbya gossypii GN=FPR3 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.588e-11
Identity = 47/126 (37.30%), Postives = 65/126 (51.59%), Query Frame = -1
Query:  203 SYQKVKNPKTE-KEMGIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 577
            S +K   PKT+  E G+  +    G+G     G +V +   G  KNG +  K  S K     PF F++G G VIKGWD GV GM VG   R+     YAYG    P  GI  NS L F+++++ ++
Sbjct:  300 SKKKDDKPKTKILEGGVVIEDRVVGSGKAAKKGARVGMRYIGKLKNGKVFDKNTSGK-----PFVFKLGHGEVIKGWDIGVAGMAVGGERRIVIPAAYAYGKQALP--GIPANSELTFDVKLVSLK 418          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP4_NEUCR (FK506-binding protein 4 OS=Neurospora crassa GN=fpr-4 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.537e-11
Identity = 41/102 (40.20%), Postives = 56/102 (54.90%), Query Frame = -1
Query:  203 GNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 508
            G G     G +V +   G  +NG    K +     G  PF+F++GKG VIKGWD GV GM VG   RL      AYG+   P  GI PNS L F++++L+++
Sbjct:  373 GTGRAAKNGDRVGMRYIGKLQNG----KVFDSNKKGA-PFSFKLGKGEVIKGWDIGVAGMAVGGERRLTIPAHLAYGSRALP--GIPPNSTLIFDVKLLEIK 467          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB39_DROME (39 kDa FK506-binding nuclear protein OS=Drosophila melanogaster GN=FK506-bp1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.537e-11
Identity = 47/135 (34.81%), Postives = 68/135 (50.37%), Query Frame = -1
Query:  206 KKSYQKVKNPKTEKEMGIEKQILTPG---------NGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 583
            KK   K K P  ++    + + +T G          G +   G++V+V+  G  ++ +   K +     G+ PF F +G G VIKGWD GV GM+VG    + C P  AYGA G P   I PNS L FE+++  V
Sbjct:  227 KKEQPKAKEPAKQQPASKDPRTITGGVKIVDQVVGKGEEAKQGKRVSVYYIGRLQSNN---KTFDSLLKGK-PFKFALGGGEVIKGWDVGVAGMKVGGKRVITCPPHMAYGARGAPP-KIGPNSTLVFEVELKAV 356          
The following BLAST results are available for this feature:
BLAST of CB304941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FKBP4_ASPOR4.178e-1241.18FK506-binding protein 4 OS=Aspergillus oryzae GN=f... [more]
FKBP4_ASPFU4.178e-1240.20FK506-binding protein 4 OS=Aspergillus fumigatus G... [more]
FKBP_NEIMA5.457e-1242.31FK506-binding protein OS=Neisseria meningitidis se... [more]
FKBP4_DICDI5.457e-1238.89FK506-binding protein 4 OS=Dictyostelium discoideu... [more]
FKB70_ARATH7.127e-1238.7170 kDa peptidyl-prolyl isomerase OS=Arabidopsis th... [more]
FKBP2_DICDI1.216e-1144.33FK506-binding protein 2 OS=Dictyostelium discoideu... [more]
FKBP5_RHIOR1.588e-1137.04FK506-binding protein 5 OS=Rhizopus oryzae GN=FKBP... [more]
FKBP3_ASHGO1.588e-1137.30FK506-binding protein 3 OS=Ashbya gossypii GN=FPR3... [more]
FKBP4_NEUCR3.537e-1140.20FK506-binding protein 4 OS=Neurospora crassa GN=fp... [more]
FKB39_DROME3.537e-1134.8139 kDa FK506-binding nuclear protein OS=Drosophila... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304941 ID=CB304941; Name=CB304941; organism=Citrus sinensis; type=EST; length=589bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAAAAAGTTGCACATGTA
GTGTTATTAAAACGTCGAAAAAAAAATCGTTCCAACATATCCATCTGATA
TTTATCAGGAGTTCAGGATAACATACATACATGTCCATGGTAAGACAATT
TATTTAAAACCATAAAATTTCTAGATGGTTTTCTGCCTTTATGAGGTGCT
TATTCTACCTGCAGGACTTGTATCTCGAAATCCAGGACTGAGTTAGGTTG
AATCCCCCATTGTGGAAATCCACCAGCACCATAGGCGTAATCTGGGGAGC
ACCGCAGACGAGCAACTTCTCCCACCTGCATTCCCATCACGCCTTCATCC
CATCCTTTTATAACAGAGCCTTTGCCAATCTGGAATGTAAAAGGCTGCTG
CCCAGGGTCCTTTGGGCTCCAGAACTTCTGAGACAGATCGCCATTTTTCC
CGTAGCCAGTGCAGTGGACGGTAACCTTCTGACCAGCAACCGGCTTAGGA
CCGTTTCCTGGGGTCAAAATTTGCTTCTCTATTCCCATCTCCTTCTCTGT
CTTAGGGTTTTTGACTTTCTGGTAACTCTTTTTAATCCC
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