CB304941

Overview
NameCB304941
Unique NameCB304941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304941_ssr121 microsatellite CB304941_ssr121:121..132. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6967 contig Csv1_Contig6967:59..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB1A_NEUCR (Peptidyl-prolyl cis-trans isomerase fkr-2 OS=Neurospora crassa GN=fkr-2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.619e-11
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = -1
Query:  203 GIEKQILTPGNGPKPVA-GQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYG---AGGFPQWGIQPNSVLDFEIQVLQVE 535
            G++ ++   G G +    G  V VH  G   +G   +KF +  D G+ P  F +G+G VIKGWDEG++GM++GE  +L  +P  AYG    GG     I  NS L FE +++ ++
Sbjct:    8 GLQIEVQQEGQGTRETRRGDNVDVHYKGVLTSG---KKFDASYDRGE-PLNFTVGQGQVIKGWDEGLLGMKIGEKRKLTIAPHLAYGNRAVGGI----IPANSTLIFETELVGIK 114          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP4_SPOFR (46 kDa FK506-binding nuclear protein OS=Spodoptera frugiperda GN=FKBP46 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.033e-11
Identity = 46/122 (37.70%), Postives = 63/122 (51.64%), Query Frame = -1
Query:  203 KNPKTEKEMGIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSP--KDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 562
            K  K +   G+  + L  G+GP   AG+ V V+  G  K  +   K +    K PG   F F++G   VI GWD G+ GM+VG   ++ C P  AYGA G P   I PNS L FE+ +  V+
Sbjct:  298 KKEKKQIAGGVSIEDLKVGSGPVAKAGKVVMVYYEGRLKQNN---KMFDNCVKGPG---FKFRLGSKEVISGWDVGIAGMKVGGKRKIVCPPAMAYGAKGSPP-VIPPNSTLVFEVDLKNVK 412          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP_NEIMC (FK506-binding protein OS=Neisseria meningitidis serogroup C GN=fbp PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.879e-11
Identity = 41/99 (41.41%), Postives = 59/99 (59.60%), Query Frame = -1
Query:  206 GPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 502
            G + V G+++TVH TG+ ++G    KF S  D  +QP T  +G G VIKGWDEG  GM+ G   +L    +  YGA G     I P++ L FE+++L+V
Sbjct:   14 GKEAVKGKEITVHYTGWLEDGT---KFDSSLDR-RQPLTITLGVGQVIKGWDEGFGGMKEGGKRKLTIPSEMGYGAHG-AGGVIPPHATLIFEVELLKV 107          
The following BLAST results are available for this feature:
BLAST of CB304941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FKB1A_NEUCR4.619e-1136.52Peptidyl-prolyl cis-trans isomerase fkr-2 OS=Neuro... [more]
FKBP4_SPOFR6.033e-1137.7046 kDa FK506-binding nuclear protein OS=Spodoptera... [more]
FKBP_NEIMC7.879e-1141.41FK506-binding protein OS=Neisseria meningitidis se... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304941 ID=CB304941; Name=CB304941; organism=Citrus sinensis; type=EST; length=589bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAAAAAGTTGCACATGTA
GTGTTATTAAAACGTCGAAAAAAAAATCGTTCCAACATATCCATCTGATA
TTTATCAGGAGTTCAGGATAACATACATACATGTCCATGGTAAGACAATT
TATTTAAAACCATAAAATTTCTAGATGGTTTTCTGCCTTTATGAGGTGCT
TATTCTACCTGCAGGACTTGTATCTCGAAATCCAGGACTGAGTTAGGTTG
AATCCCCCATTGTGGAAATCCACCAGCACCATAGGCGTAATCTGGGGAGC
ACCGCAGACGAGCAACTTCTCCCACCTGCATTCCCATCACGCCTTCATCC
CATCCTTTTATAACAGAGCCTTTGCCAATCTGGAATGTAAAAGGCTGCTG
CCCAGGGTCCTTTGGGCTCCAGAACTTCTGAGACAGATCGCCATTTTTCC
CGTAGCCAGTGCAGTGGACGGTAACCTTCTGACCAGCAACCGGCTTAGGA
CCGTTTCCTGGGGTCAAAATTTGCTTCTCTATTCCCATCTCCTTCTCTGT
CTTAGGGTTTTTGACTTTCTGGTAACTCTTTTTAATCCC
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