CB304947

Overview
NameCB304947
Unique NameCB304947
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig360 contig Csv1_Contig360:1..562. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304947 vs. ExPASy Swiss-Prot
Match: CYSH_MYCBT (Phosphoadenosine phosphosulfate reductase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=cysH PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.339e-19
Identity = 62/171 (36.26%), Postives = 87/171 (50.88%), Query Frame = -2
Query:   53 DVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD-AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQEDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHTQGYISIGCEPCT 562
            D  L++ A        V  LDTG    ET    D +E  + +R+  + P+  V  Q  +  K LF+       ECCR+RKV PL + L+G  AW+TG R+  +P TR+  P+V  D  F+        LVK NP+A     D+  ++   DV +N L  +GY SIGC PCT
Sbjct:   69 DAVLVDLAAKVRPGVPVIFLDTGYHFVETIGTRDAIESVYDVRVLNVTPEHTVAEQDELLGKDLFA---RNPHECCRLRKVVPLGKTLRGYSAWVTGLRRVDAP-TRANAPLVSFDETFK--------LVKVNPLAAWTDQDVQEYIADNDVLVNPLVREGYPSIGCAPCT 227          
BLAST of CB304947 vs. ExPASy Swiss-Prot
Match: CYSH_MYCBP (Phosphoadenosine phosphosulfate reductase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=cysH PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.339e-19
Identity = 62/171 (36.26%), Postives = 87/171 (50.88%), Query Frame = -2
Query:   53 DVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD-AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQEDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHTQGYISIGCEPCT 562
            D  L++ A        V  LDTG    ET    D +E  + +R+  + P+  V  Q  +  K LF+       ECCR+RKV PL + L+G  AW+TG R+  +P TR+  P+V  D  F+        LVK NP+A     D+  ++   DV +N L  +GY SIGC PCT
Sbjct:   69 DAVLVDLAAKVRPGVPVIFLDTGYHFVETIGTRDAIESVYDVRVLNVTPEHTVAEQDELLGKDLFA---RNPHECCRLRKVVPLGKTLRGYSAWVTGLRRVDAP-TRANAPLVSFDETFK--------LVKVNPLAAWTDQDVQEYIADNDVLVNPLVREGYPSIGCAPCT 227          
BLAST of CB304947 vs. ExPASy Swiss-Prot
Match: CYSH_MYCBO (Probable phosphoadenosine phosphosulfate reductase OS=Mycobacterium bovis GN=cysH PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.339e-19
Identity = 62/171 (36.26%), Postives = 87/171 (50.88%), Query Frame = -2
Query:   53 DVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD-AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQEDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHTQGYISIGCEPCT 562
            D  L++ A        V  LDTG    ET    D +E  + +R+  + P+  V  Q  +  K LF+       ECCR+RKV PL + L+G  AW+TG R+  +P TR+  P+V  D  F+        LVK NP+A     D+  ++   DV +N L  +GY SIGC PCT
Sbjct:   69 DAVLVDLAAKVRPGVPVIFLDTGYHFVETIGTRDAIESVYDVRVLNVTPEHTVAEQDELLGKDLFA---RNPHECCRLRKVVPLGKTLRGYSAWVTGLRRVDAP-TRANAPLVSFDETFK--------LVKVNPLAAWTDQDVQEYIADNDVLVNPLVREGYPSIGCAPCT 227          
BLAST of CB304947 vs. ExPASy Swiss-Prot
Match: CYSH_BACA2 (Phosphoadenosine phosphosulfate reductase OS=Bacillus amyloliquefaciens (strain FZB42) GN=cysH PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.339e-19
Identity = 59/178 (33.15%), Postives = 89/178 (50.00%), Query Frame = -2
Query:   32 VALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF-GIRIEYMFPD-AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQEDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHTQGYISIGCEPCTRPVLPGQ 559
            + LI+      +   +  LDTG    ETY   ++V++ + G+ I    P   +E QA      L   +E    +CC +RK+ PLR AL G  AW++G R+DQ P +R+    + +D  F+ ++  V  L+ W         DIW +    ++  N LH QGY SIGCEPCT P    +
Sbjct:   49 IVLIDLISKVKKDAEIVFLDTGLHFKETYETIEKVKERYPGLNIILKKPSLTLEEQAEAHGDKL---WEREPNQCCYIRKILPLREALAGHPAWLSGLRRDQGP-SRANTNFLNKDDKFQSIK--VCPLIHWT------WKDIWRYTSKHELDYNILHDQGYPSIGCEPCTSPAFTAE 214          
BLAST of CB304947 vs. ExPASy Swiss-Prot
Match: CYSH1_BACSU (Phosphoadenosine phosphosulfate reductase OS=Bacillus subtilis GN=cysH PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.593e-18
Identity = 60/178 (33.71%), Postives = 89/178 (50.00%), Query Frame = -2
Query:   32 VALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF-GIRIEYMFPD-AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQEDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHTQGYISIGCEPCTRPVLPGQ 559
            + LI+  +   +   +  LDTG    ETY   + V++ + G+ I    PD  +E QA      L   +E    +CC +RKV PLR AL G  AW++G R+DQ P +R+    + +D  F+ ++  V  L+ W         DIW +    ++  N LH QGY SIGC PCT P    +
Sbjct:   49 IVLIDLIYKVKKDAEIVFLDTGLHFKETYETIERVKERYPGLNIILKKPDLTLEEQAEEHGDKL---WEREPNQCCYLRKVVPLREALSGHPAWLSGLRRDQGP-SRANTNFLNKDEKFKSVK--VCPLIHWT------WKDIWRYTSRNELDYNPLHDQGYPSIGCAPCTSPAFTAE 214          
BLAST of CB304947 vs. ExPASy Swiss-Prot
Match: CYSH_STAES (Phosphoadenosine phosphosulfate reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=cysH PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.717e-18
Identity = 56/160 (35.00%), Postives = 87/160 (54.37%), Query Frame = -2
Query:   44 RVFSLDTGRLNPETYRFFDEV-EKHFGIRIEYMFPD-AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQEDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHTQGYISIGCEPCTRPV 517
            ++  LDT     ETY   D V +K+  +RI+   P+  +E Q    +  L   +++   +CC +RK++PL   L G  AWI+G R+ QSP TR+    + +D  F+ ++  V  L+ W         ++W+++R  D+P N LH Q Y SIGC PCT PV
Sbjct:   69 QIVFLDTDLHFQETYDLIDRVKDKYPQLRIKMKKPELTLEEQGEKYNPAL---WKNDPNQCCYIRKIKPLEDVLSGAVAWISGLRRAQSP-TRAHTNFINKDERFKSIK--VCPLIYWTE------EEVWSYIRDKDLPYNELHDQNYPSIGCIPCTSPV 216          
BLAST of CB304947 vs. ExPASy Swiss-Prot
Match: CYSH_STAEQ (Phosphoadenosine phosphosulfate reductase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=cysH PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.717e-18
Identity = 56/160 (35.00%), Postives = 87/160 (54.37%), Query Frame = -2
Query:   44 RVFSLDTGRLNPETYRFFDEV-EKHFGIRIEYMFPD-AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQEDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHTQGYISIGCEPCTRPV 517
            ++  LDT     ETY   D V +K+  +RI+   P+  +E Q    +  L   +++   +CC +RK++PL   L G  AWI+G R+ QSP TR+    + +D  F+ ++  V  L+ W         ++W+++R  D+P N LH Q Y SIGC PCT PV
Sbjct:   69 QIVFLDTDLHFQETYDLIDRVKDKYPQLRIKMKKPELTLEEQGEKYNPAL---WKNDPNQCCYIRKIKPLEDVLSGAVAWISGLRRAQSP-TRAHTNFINKDERFKSIK--VCPLIYWTE------EEVWSYIRDKDLPYNELHDQNYPSIGCIPCTSPV 216          
BLAST of CB304947 vs. ExPASy Swiss-Prot
Match: CYSH_RHILO (Phosphoadenosine phosphosulfate reductase OS=Rhizobium loti GN=cysH PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.717e-18
Identity = 58/166 (34.94%), Postives = 88/166 (53.01%), Query Frame = -2
Query:   32 RPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQEDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHTQGYISIGCEPCTRPVLPGQ 526
            R   V  LDTG+   ET  + D +   FG+  I+ + P   E  AL R     + ++     CC VRKV PL R +   RAW TG+++ Q+  TR+ +PV +           VG+ ++ NP+A+   +D  +++R   +  N L   GY+SIGC PCT+PV PG+
Sbjct:   72 RTLPVIFLDTGKHFEETLGYRDALVADFGLTNIQVIKP---EEAALARIDPTGNLHQSNTDACCDVRKVEPLARGVAPFRAWFTGRKRFQA-STRAALPVFE----------AVGARIRINPLAHWTTSDQADYMRAHALRENPLVAYGYLSIGCFPCTQPVQPGE 223          
BLAST of CB304947 vs. ExPASy Swiss-Prot
Match: CYSH_GEOTN (Phosphoadenosine phosphosulfate reductase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=cysH PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.549e-18
Identity = 61/175 (34.86%), Postives = 88/175 (50.29%), Query Frame = -2
Query:   41 VALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF-GIRIEYMFPD-AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQEDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHTQGYISIGCEPCTRPVL 559
            + LI+          +  LDTG    ETY    +V++ +  +RI    P   +E QA      L   ++    +CC +RKV PLR  L G+ AWI+G R++QSP TR  +  V +D  F  ++  V  L+ W         D+WN++    +P N LH +GY SIGC PCT P L
Sbjct:   50 IVLIDLISQVKPDAEIVFLDTGLHFQETYDTIAKVKETYPSLRIIMKQPHLTLEEQAAQFGDEL---WKRDPNKCCELRKVIPLREVLTGVTAWISGLRREQSP-TRRHVEYVNKDDKFRSIK--VCPLIHWT------WKDVWNYVYKHSLPYNVLHDRGYPSIGCAPCTAPAL 212          
BLAST of CB304947 vs. ExPASy Swiss-Prot
Match: CYSH_BACP2 (Phosphoadenosine phosphosulfate reductase OS=Bacillus pumilus (strain SAFR-032) GN=cysH PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.635e-18
Identity = 61/178 (34.27%), Postives = 89/178 (50.00%), Query Frame = -2
Query:   32 VALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF-GIRIEYMFPD-AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQEDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHTQGYISIGCEPCTRPVLPGQ 559
            + LI+      +  R+  LDTG    ETY   D V++ + G+ I    P+  VE Q       L   ++   Q CC +RKV PL+ AL G  AW++G R++QSP  R+    + +D  F+ ++  V  L+ W         DIW +    ++  N LH QGY SIGC PCT+P    Q
Sbjct:   49 IVLIDLIAKVKKDARIVFLDTGLHFKETYDTIDAVKERYPGLDIVLKTPELTVEEQNDQHGDQL---WKTDPQSCCHMRKVIPLQEALSGYPAWLSGLRREQSP-KRAGTNFLNKDEKFKSVK--VCPLIHWT------WKDIWRYASREELTYNPLHDQGYPSIGCAPCTQPAFTAQ 214          
The following BLAST results are available for this feature:
BLAST of CB304947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CYSH_MYCBT9.339e-1936.26Phosphoadenosine phosphosulfate reductase OS=Mycob... [more]
CYSH_MYCBP9.339e-1936.26Phosphoadenosine phosphosulfate reductase OS=Mycob... [more]
CYSH_MYCBO9.339e-1936.26Probable phosphoadenosine phosphosulfate reductase... [more]
CYSH_BACA29.339e-1933.15Phosphoadenosine phosphosulfate reductase OS=Bacil... [more]
CYSH1_BACSU1.593e-1833.71Phosphoadenosine phosphosulfate reductase OS=Bacil... [more]
CYSH_STAES2.717e-1835.00Phosphoadenosine phosphosulfate reductase OS=Staph... [more]
CYSH_STAEQ2.717e-1835.00Phosphoadenosine phosphosulfate reductase OS=Staph... [more]
CYSH_RHILO2.717e-1834.94Phosphoadenosine phosphosulfate reductase OS=Rhizo... [more]
CYSH_GEOTN3.549e-1834.86Phosphoadenosine phosphosulfate reductase OS=Geoba... [more]
CYSH_BACP24.635e-1834.27Phosphoadenosine phosphosulfate reductase OS=Bacil... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_E09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_E09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304947 ID=CB304947; Name=CB304947; organism=Citrus sinensis; type=EST; length=563bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTGTCCTGGAAGGACAGGC
CTTGTGCATGGCTCACACCCAATTGAGATGTACCCTTGTGTGTGCAAGGA
ATTGATGGGCACATCCATAGTACGAAGGAAGTTCCAAATGTCATTCCCCT
TCACATTAGCCACTGGATTCCACTTCACCAGGCTGCCAACCCCACCTTCC
AGCCCCTCAAAAACTGGATCCTCCTGGACTACAGGGATTTCAGACCTAGT
ACCTGGAGACTGATCTTTCCTTTGGCCAGTGATCCAGGCACGCAATCCCT
TGAGGGCCCTCCGAAGGGGCCTCACTTTCCTCACACGGCAGCACTCCTGG
TGCCCATCCTCATAGAAAGAGAAGAGCCCCTTGCTCCTCACTAATGCCTG
AACTTCAACAGCATCGGGAAACATGTATTCAATACGTATGCCAAAATGTT
TCTCAACTTCGTCAAAGAATCTATATGTTTCTGGGTTTAGCCTTCCAGTA
TCCAGGCTAAACACCCTAAATGGTCTACCAGTTAAATGGGCATACTCGAT
CAAAGCAACATCT
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