CB304953

Overview
NameCB304953
Unique NameCB304953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:930..1588. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 7.066e-33
Identity = 65/113 (57.52%), Postives = 82/113 (72.57%), Query Frame = -2
Query:  272 AALKLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 610
            A +KL   ++LC++V  P +   ITCG VS  LAPCIG+L+ GGP+   CC G+++LNAAA TTPDR+TACNCLK AA +I  +N   AAGLPG CGV IPY IS ST+C+ V
Sbjct:    5 AVIKLACAVLLCIVVAAPYAEAGITCGMVSSKLAPCIGYLK-GGPLGGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.228e-33
Identity = 70/117 (59.83%), Postives = 85/117 (72.65%), Query Frame = -2
Query:  269 MAALKLVSTLVL-CMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 613
            MA L  +S LVL CM+V GP++  A ++CG VSG+LA CIG+L   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA + P+LN   AAGLP ACGV+IPYKIS ST+C+ VR
Sbjct:    1 MAGLVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.205e-32
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = -2
Query:  269 ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 541
            ITCGQVS SLAPCIG++R GG +P  CCNG+R++N  ARTTPDR+TACNCLKQ + SI  +N NNAA LPG CGV+IPYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPACCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.685e-32
Identity = 67/107 (62.62%), Postives = 82/107 (76.64%), Query Frame = -2
Query:  269 LVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 586
            LV+CM+V  P++  AI+CG V+  L+PC+ +L +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AA SI  LN NNAA LPG CGV+IPYKISTST+C+ V+
Sbjct:    4 LVMCMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.507e-32
Identity = 67/107 (62.62%), Postives = 81/107 (75.70%), Query Frame = -2
Query:  269 LVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 586
            LV+CM+V  P++  AI+CG V+  L+PC+ +L +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AA SI  LN NNAA LPG CGV IPYKISTST+C+ V+
Sbjct:   12 LVMCMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.580e-32
Identity = 65/115 (56.52%), Postives = 83/115 (72.17%), Query Frame = -2
Query:  269 ALKLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGP--IPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 607
            +LKL   +VLCM+V  PL+  A+T GQV+ SLAPCI +LR  G   +P  CC G++SLN+AA+TTP RQ AC C+K AA  I  +N   A+GLPG CGV+IPYKIS STDC+ V+
Sbjct:    6 SLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.580e-32
Identity = 65/115 (56.52%), Postives = 83/115 (72.17%), Query Frame = -2
Query:  269 ALKLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGP--IPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 607
            +LKL   +VLCM+V  PL+  A+T GQV+ SLAPCI +LR  G   +P  CC G++SLN+AA+TTP RQ AC C+K AA  I  +N   A+GLPG CGV+IPYKIS STDC+ V+
Sbjct:    2 SLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.981e-32
Identity = 66/107 (61.68%), Postives = 82/107 (76.64%), Query Frame = -2
Query:  269 LVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 586
            LV+CM+V  P++  AI+CG V+  L+PC+ +L +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AA SI  LN NNAA LPG CGV+IPYKIST+T+C+ V+
Sbjct:   12 LVICMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.981e-32
Identity = 60/91 (65.93%), Postives = 73/91 (80.22%), Query Frame = -2
Query:  269 ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 541
            ITCGQVS +LAPCI ++R GG +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +N NNAA LPG CGV IPYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.812e-32
Identity = 64/114 (56.14%), Postives = 88/114 (77.19%), Query Frame = -2
Query:  269 LKLVSTLVLCMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPS-LNLNNAAGLPGACGVSIPYKISTSTDCSKVR 604
            +KL   L+ CM+V GP+++ A ++CG V+ +LA CIG++  GG IP  CC+GV++LN+ A+TTPDRQ ACNC++ AAR++ S LN   AAG+P ACGV+IPYKISTST+C  VR
Sbjct:    5 MKLACLLLACMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
The following BLAST results are available for this feature:
BLAST of CB304953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_SPIOL7.066e-3357.52Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP1_BRANA9.228e-3359.83Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP1_PRUAR1.205e-3268.13Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP4_LENCU2.685e-3262.62Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP6_LENCU3.507e-3262.62Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP2_GOSHI4.580e-3256.52Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI4.580e-3256.52Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP2_LENCU5.981e-3261.68Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP1_PRUPE5.981e-3265.93Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_ARATH7.812e-3256.14Non-specific lipid-transfer protein 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_F08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_F08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304953 ID=CB304953; Name=CB304953; organism=Citrus sinensis; type=EST; length=665bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTTGTTAAACTGAACACA
AGGCAAGATTTCATTTAATAACAGAATAGACACAAACTGACGATGACATG
AAAAGCAAAGACAATAAAACATAACATGAAACGAGGGCGCGAACGAGACT
CGCAGTACAAAGTGTAGAGAGAGACTCATAAATCGGACACAAAAATGTCC
TTATTATTATACATTTATTCTACTCCGTCAACTTAAACCTGAAAATCAAC
GGCCCAGATTCCTGTTCACCTGACCTTAGAGCAGTCAGTGGAGGTGCTGA
TCTTGTAAGGAATGCTGACTCCACAAGCTCCTGGAAGACCAGCAGCATTA
TTAAGGTTGAGGCTAGGGATTGATCTGGCGGCTTGCTTCAAGCAGTTGCA
TGCAGTTTGGCGGTCAGGTGTGGTTCTGGCGGCAGCGTTGAGAGACCTGA
CGCCGTTGCAGCATGGCATAGGTATAGGGCCGCCCGATCTCAAGAAACCG
ATGCATGGTGCCAATGAGCCACTCACCTGCCCACATGTTATGGCCTGAGC
ACTCAGGGGACCAGTCACCAACATGCACAGAACCAAAGTTGAAACAAGCT
TGAGGGCAGCCATTTGAGATTTCTCCTGAGATTTTCTTTTTCTTTTTTTT
TTTTTGCCTTGGTTA
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