CB304953

Overview
NameCB304953
Unique NameCB304953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:930..1588. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.020e-31
Identity = 67/107 (62.62%), Postives = 83/107 (77.57%), Query Frame = -2
Query:  269 LVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 586
            LV+CM+V  P++  AI+CG V+G L+PC+ +L +GGP P P CC GV+ L AAA TTPDRQ ACNC+K AA SI  LN NNAA LPG CGV+IPYKISTST+C+ V+
Sbjct:   12 LVMCMIVA-PMAEGAISCGAVTGDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.333e-31
Identity = 61/114 (53.51%), Postives = 87/114 (76.32%), Query Frame = -2
Query:  269 LKLVSTLVLCMLVTGPLSA-QAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSI-PSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 604
            +KL   ++ CM+V GP++A +A+TCG V+ ++APCIG++  GG +P  CC GV  LN+ ARTTPDRQ AC CL+ AAR++ P+LN   AAG+P ACGVS+P+ IST+T+C+ V+
Sbjct:    5 MKLACLVLACMIVAGPITANRALTCGTVNSNVAPCIGYITQGGTLPGACCTGVSKLNSMARTTPDRQQACRCLETAARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.877e-31
Identity = 66/111 (59.46%), Postives = 83/111 (74.77%), Query Frame = -2
Query:  269 KLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 601
            K+   +VLCM+V  P  A+AITCGQV+ +LAPC+ +LR+ GP+   CC GV++L  +ARTT DRQ AC CLK AA +I  +NL  AAGLP  CGV+IPYKIS STDCSKV+
Sbjct:    6 KIACFVVLCMVVAAPC-AEAITCGQVTSNLAPCLAYLRNTGPLGR-CCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.064e-31
Identity = 65/111 (58.56%), Postives = 84/111 (75.68%), Query Frame = -2
Query:  272 VSTLVLCM-LVTGPLSAQAITCGQVSGSLAPCIGFLRS--GGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 595
            V+ +V+ M L T P +   +TCGQV+G+LAPC+G+LRS    P+P+ CCN VR LN AARTT D++TAC CLKQ A ++  LNLN AAGLP  CGV+IPYKIS +TDC++V
Sbjct:    9 VAMMVMYMVLATTPNAEAVLTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.637e-31
Identity = 62/114 (54.39%), Postives = 84/114 (73.68%), Query Frame = -2
Query:  269 LKLVSTLVLCMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGP-IPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 604
            +KL   +  CM+V GP+++ A ++CG VSG +APCIG+L    P +P  CC+GV SLN  ARTTPDRQ AC CL  AA ++P++N+  AAGLP ACGV+IPYKIS +T+C+ V+
Sbjct:    5 MKLACLIFACMIVAGPITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.473e-30
Identity = 57/91 (62.64%), Postives = 73/91 (80.22%), Query Frame = -2
Query:  269 ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 541
            ITCGQVS +LAPCI +++ GG +P  CCNG+R++N  ARTT DR+ ACNCLKQ + SIP +N NNAA LPG CGV++PYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPACCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.287e-30
Identity = 60/111 (54.05%), Postives = 77/111 (69.37%), Query Frame = -2
Query:  272 LKLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 604
            + ++   V CM+ +    A AI+CGQV+  L PC G+L +GGP+P  CCNGVR LN AA+TTPDRQTAC CLK    +   +NLNNA  LPG CG+SI YKI+ + DCSK+
Sbjct:    6 MNVLCVAVACMVFSASY-ADAISCGQVTSGLVPCFGYLAAGGPVPPACCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.779e-29
Identity = 64/113 (56.64%), Postives = 78/113 (69.03%), Query Frame = -2
Query:  272 AALKLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 610
            A L LV+ LV  +L+  P +A AITCGQV+ ++ PC+ + R G      CC+GVRSL AAA TT DR+TACNCLK AAR I  LN  NAA +P  CGVS+PY IS S DCS+V
Sbjct:    4 AQLVLVA-LVAALLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.779e-29
Identity = 64/113 (56.64%), Postives = 78/113 (69.03%), Query Frame = -2
Query:  272 AALKLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 610
            A L LV+ LV  +L+  P +A AITCGQV+ ++ PC+ + R G      CC+GVRSL AAA TT DR+TACNCLK AAR I  LN  NAA +P  CGVS+PY IS S DCS+V
Sbjct:    4 AQLVLVA-LVAALLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.629e-29
Identity = 61/111 (54.95%), Postives = 81/111 (72.97%), Query Frame = -2
Query:  269 KLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 601
            K+   +VLCM+V  P  A+A++CGQV   LAPC+ +L+  GP+   CC GV+ L  AA++  DR+TAC CLK AA +I  +++  AAGLPGACGV+IPYKIS STDCSKV+
Sbjct:    6 KIACFVVLCMVVVAP-HAEALSCGQVQSGLAPCLPYLQGRGPLGS-CCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
The following BLAST results are available for this feature:
BLAST of CB304953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP5_LENCU1.020e-3162.62Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTPA_BRAOT1.333e-3153.51Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTP1_TOBAC3.877e-3159.46Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP_DAUCA5.064e-3158.56Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTPD_BRAOT8.637e-3154.39Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP1_PRUDO1.473e-3062.64Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP_GERHY4.287e-3054.05Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP1_ORYSJ2.779e-2956.64Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI2.779e-2956.64Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP2_TOBAC3.629e-2954.95Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_F08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_F08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304953 ID=CB304953; Name=CB304953; organism=Citrus sinensis; type=EST; length=665bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTTGTTAAACTGAACACA
AGGCAAGATTTCATTTAATAACAGAATAGACACAAACTGACGATGACATG
AAAAGCAAAGACAATAAAACATAACATGAAACGAGGGCGCGAACGAGACT
CGCAGTACAAAGTGTAGAGAGAGACTCATAAATCGGACACAAAAATGTCC
TTATTATTATACATTTATTCTACTCCGTCAACTTAAACCTGAAAATCAAC
GGCCCAGATTCCTGTTCACCTGACCTTAGAGCAGTCAGTGGAGGTGCTGA
TCTTGTAAGGAATGCTGACTCCACAAGCTCCTGGAAGACCAGCAGCATTA
TTAAGGTTGAGGCTAGGGATTGATCTGGCGGCTTGCTTCAAGCAGTTGCA
TGCAGTTTGGCGGTCAGGTGTGGTTCTGGCGGCAGCGTTGAGAGACCTGA
CGCCGTTGCAGCATGGCATAGGTATAGGGCCGCCCGATCTCAAGAAACCG
ATGCATGGTGCCAATGAGCCACTCACCTGCCCACATGTTATGGCCTGAGC
ACTCAGGGGACCAGTCACCAACATGCACAGAACCAAAGTTGAAACAAGCT
TGAGGGCAGCCATTTGAGATTTCTCCTGAGATTTTCTTTTTCTTTTTTTT
TTTTTGCCTTGGTTA
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