CB304953

Overview
NameCB304953
Unique NameCB304953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:930..1588. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.739e-29
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = -2
Query:  269 LKLVSTLVL--CMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNN--AAGLPGACGVSIPYKISTSTDCSKVR 604
            LKLV  + +  CM V GP +  A++CGQV  +L PCI ++ +GG +   CC GVRSL + A+TT DRQ+ CNCLKQA   IP  N N   AAGLPG CGV+IPYKIS STDC  ++
Sbjct:    8 LKLVCLVAVMCCMAVGGPKAMAAVSCGQVVNNLTPCINYVANGGALNPSCCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.739e-29
Identity = 61/114 (53.51%), Postives = 81/114 (71.05%), Query Frame = -2
Query:  269 LKLVSTLVLCMLVTGPLSAQAI-TCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSI-PSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 604
            +KL   ++ CM+V GP++A A+ +CG V+G+LA CI +L  G P+   CCNGV +L   A TTPDRQ AC CL+ AA+++ P LN   AAGLP AC V+IPYKIS ST+C+ VR
Sbjct:    5 MKLACMVLACMIVAGPITANALMSCGTVNGNLAGCIAYLTRGAPLTQGCCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.056e-28
Identity = 64/113 (56.64%), Postives = 79/113 (69.91%), Query Frame = -2
Query:  272 LKLVSTLVLCM-LVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 604
            L +V+T V+ + L+    S  AI+CGQV+ ++APCI + R  G  P   CC+GVRSLN AARTT DR+ ACNCLK AA  +  LN  NAA +P  CGVSIPY ISTSTDCS+V
Sbjct:    7 LAVVATAVVALVLLAAATSEAAISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.801e-28
Identity = 59/106 (55.66%), Postives = 76/106 (71.70%), Query Frame = -2
Query:  269 LVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 586
            LV+CM+V  P++  A++CG V+G LAPCI +L  G      CC GV+ L AAA TT DRQ ACNCLK AA +I +LN  NAA LPG C V+IPYKIST+T+C+ ++
Sbjct:   12 LVMCMVVIAPMAEAAVSCGTVTGDLAPCIPYLTGGAGPTDSCCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.801e-28
Identity = 59/113 (52.21%), Postives = 81/113 (71.68%), Query Frame = -2
Query:  269 ALKLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 607
            AL+  + LVL + +   + A AI+CG V+GSLAPC  +L  GG +P  CC GV++LN+ A+TTPDRQ AC C++  A+SI  LN + A+GLPG CGVSIPY IS ST+C+ ++
Sbjct:    4 ALRFFTCLVLTVCIVASVDA-AISCGTVAGSLAPCATYLSKGGLVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.352e-28
Identity = 61/114 (53.51%), Postives = 81/114 (71.05%), Query Frame = -2
Query:  269 ALKLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSI-PSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 607
            AL+  +  VL + +   + A AITCG V+ SL+PC+G+L  GG +P PCC GV+ LN  A+TTPDRQ AC CL+ AA+ + PSL    A+GLPG CGVSIPY ISTST+C+ ++
Sbjct:    4 ALRFFTCFVLTVFIVASVDA-AITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAAKGVNPSL----ASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.352e-28
Identity = 63/113 (55.75%), Postives = 80/113 (70.80%), Query Frame = -2
Query:  272 ALKLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 607
            A+ +V+ +V+ +  T   S  AI+CGQVS ++A C+ + R  G  P   CC+GVRSLN+AARTT DR+ ACNCLK AAR I  LN  NAA +P  CGVS+PY ISTSTDCS+V
Sbjct:    7 AIAVVAAVVVVLAAT--TSEAAISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.072e-28
Identity = 61/115 (53.04%), Postives = 76/115 (66.09%), Query Frame = -2
Query:  272 MAALKLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 613
            +A    V      +++    S  A+TCGQVS ++ PC+ + R  G  P   CC+GVRSLN+AARTT DR+ ACNCLK AAR I  LN+  AA +P  CGVSIPY ISTSTDCS+V
Sbjct:    7 LAVAIAVVAAAAAVVLAATTSEAAVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.012e-28
Identity = 59/111 (53.15%), Postives = 81/111 (72.97%), Query Frame = -2
Query:  269 KLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 601
            K+   ++LCM+V  P  A+A+TCGQV+  LAPC+ +L+  GP+   CC GV++L  +A+TT DR+TAC CLK AA +I  ++LN AAG+P  C V+IPYKIS STDCS V+
Sbjct:    6 KIACFVLLCMVVVAP-HAEALTCGQVTAGLAPCLPYLQGRGPLG-GCCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.240e-28
Identity = 61/114 (53.51%), Postives = 77/114 (67.54%), Query Frame = -2
Query:  272 AALKLVSTLVLCMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 610
            A L LV+ +   +L+ GP +  A I+CGQV+ +++PC+ + R G      CC+GVRSLN+AA TT DR+TACNCLK  A SI  LN  NAA +P  CGVSIPY IS S DCS V
Sbjct:    4 AQLVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
The following BLAST results are available for this feature:
BLAST of CB304953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP3_PRUDU4.739e-2954.31Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP2_ARATH4.739e-2953.51Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP_MAIZE1.056e-2856.64Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP3_LENCU1.801e-2855.66Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP3_ARATH1.801e-2852.21Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP4_ARATH2.352e-2853.51Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP1_SORBI2.352e-2855.75Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP2_SORBI3.072e-2853.04Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP1_SOLLC4.012e-2853.15Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP2_ORYSI5.240e-2853.51Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_F08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_F08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304953 ID=CB304953; Name=CB304953; organism=Citrus sinensis; type=EST; length=665bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTTGTTAAACTGAACACA
AGGCAAGATTTCATTTAATAACAGAATAGACACAAACTGACGATGACATG
AAAAGCAAAGACAATAAAACATAACATGAAACGAGGGCGCGAACGAGACT
CGCAGTACAAAGTGTAGAGAGAGACTCATAAATCGGACACAAAAATGTCC
TTATTATTATACATTTATTCTACTCCGTCAACTTAAACCTGAAAATCAAC
GGCCCAGATTCCTGTTCACCTGACCTTAGAGCAGTCAGTGGAGGTGCTGA
TCTTGTAAGGAATGCTGACTCCACAAGCTCCTGGAAGACCAGCAGCATTA
TTAAGGTTGAGGCTAGGGATTGATCTGGCGGCTTGCTTCAAGCAGTTGCA
TGCAGTTTGGCGGTCAGGTGTGGTTCTGGCGGCAGCGTTGAGAGACCTGA
CGCCGTTGCAGCATGGCATAGGTATAGGGCCGCCCGATCTCAAGAAACCG
ATGCATGGTGCCAATGAGCCACTCACCTGCCCACATGTTATGGCCTGAGC
ACTCAGGGGACCAGTCACCAACATGCACAGAACCAAAGTTGAAACAAGCT
TGAGGGCAGCCATTTGAGATTTCTCCTGAGATTTTCTTTTTCTTTTTTTT
TTTTTGCCTTGGTTA
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