CB304953

Overview
NameCB304953
Unique NameCB304953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:930..1588. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.131e-22
Identity = 55/113 (48.67%), Postives = 74/113 (65.49%), Query Frame = -2
Query:  269 LKLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLR-SGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 604
            L LV+ +   +LV    +  AI+CGQVS +L+PCI + R +G   P+ CC+GV+ L  AA++T D+Q AC C+K AA     LN   AAG+P  CGVS+PY IS S DCSK+R
Sbjct:    9 LVLVAMVAAMLLVA---TDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAGG---LNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.477e-22
Identity = 48/110 (43.64%), Postives = 68/110 (61.82%), Query Frame = -2
Query:  272 KLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 601
            K+++ L++  +     +   I CG V+ +LA C+ +L + GP+P  CC GV+SL   A+TTPDR+  C CLK A + I  LN +  A LP  CGVSIPY IS ST+C  +
Sbjct:    6 KIITCLIVLTIYMASPTESTIQCGTVTSTLAQCLTYLTNSGPLPSQCCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.290e-22
Identity = 51/115 (44.35%), Postives = 75/115 (65.22%), Query Frame = -2
Query:  272 MAALKLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 613
            MA + LV+  V+   V    ++ A++CG V+ S+APC+ ++      P   CC+GVR+LN  A ++ DR+TAC+CLK  A S  +LN+ NAA +P  CGVS+ + ISTS DCSK+
Sbjct:    8 MALVALVA--VVAAAVVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.290e-22
Identity = 51/115 (44.35%), Postives = 75/115 (65.22%), Query Frame = -2
Query:  272 MAALKLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 613
            MA + LV+  V+   V    ++ A++CG V+ S+APC+ ++      P   CC+GVR+LN  A ++ DR+TAC+CLK  A S  +LN+ NAA +P  CGVS+ + ISTS DCSK+
Sbjct:    8 MALVALVA--VVAAAVVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.290e-22
Identity = 52/114 (45.61%), Postives = 76/114 (66.67%), Query Frame = -2
Query:  272 AALKLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPM-PCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 610
            A + L++  ++ ML   P +A AI CG V   + PC+ +++ GGP P   CC+GV++L+  AR+  DRQ+ACNCLK  AR I +LN +NA  +P  CGV++PY IS + DCS+V
Sbjct:    1 AQVMLMAVALVLMLAAVPRAAVAIDCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.204e-21
Identity = 55/120 (45.83%), Postives = 78/120 (65.00%), Query Frame = -2
Query:  278 MAALKLVSTLVLCMLVT-GPLSAQA-ITCGQVSGSLAPCIGFLRSGG---PIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSI-PSLNLNNAAGLPGACGVSIPY--KISTSTDCS 613
            MA L  +  LV   ++  GP++A+A ++CG+V+ +L PC G+L +GG   P P  CCNGVR LN    TT DR+ AC C+K AAR++ P LN + AAG+P  CG+ IPY  +I  +T C+
Sbjct:    1 MAGLMKLGCLVFVFVIAAGPITAKAALSCGEVNSNLKPCTGYLTNGGITSPGPQ-CCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.079e-20
Identity = 54/115 (46.96%), Postives = 68/115 (59.13%), Query Frame = -2
Query:  272 AALKL-VSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 610
            AA KL +  LV  ML+    +  AITCGQVS +L PC  + +  G  P   CC+GV+ L   AR+T D+Q  C CLK  A +    N   AAG+P  CGVS+PY IS S DCSK+
Sbjct:    5 AATKLALVALVAAMLLVA--ADAAITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLKSVAGAY---NAGRAAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.607e-19
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = -2
Query:  269 LVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQA--ARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 586
            L +C+++       A++C  V   L PC+ ++  GGP+P  CCNG+ +L + A+T+ DRQ  C C+K A    ++    + NA  LP  CGV +PYK S STDC  ++
Sbjct:    6 LAVCLVLALHCGEAAVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.446e-19
Identity = 46/111 (41.44%), Postives = 64/111 (57.66%), Query Frame = -2
Query:  269 LVLCMLVTGPL---SAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAAR--SIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 586
            L LC+L+       S  AI+C  V  +L PC+ ++  GG IP  CCNG+R L+  A +  D+Q  C C+K      S  S+ L  AA LPG CGV +PYKI  ST+C+ ++
Sbjct:    6 LPLCLLLASIFAWGSEAAISCNAVQANLYPCVVYVVQGGAIPYSCCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.294e-18
Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = -2
Query:  272 LVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGG-PIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 586
            LV+ +L+      +AI C QV+  LA C+ +L++GG P PM CCNG+ SL AAA    DRQ ACNCLK  A +IP +N + A  LP  CGV+I    S + DC+ +
Sbjct:   14 LVITILLGIAYHGEAIACPQVNMYLAQCLPYLKAGGNPSPM-CCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
The following BLAST results are available for this feature:
BLAST of CB304953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLT43_HORVU1.131e-2248.67Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]
NLTPC_ARATH1.477e-2243.64Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP3_ORYSJ3.290e-2244.35Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI3.290e-2244.35Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP1_WHEAT3.290e-2245.61Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTP7_ARATH6.204e-2145.83Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLTP8_HORVU3.079e-2046.96Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP6_ARATH2.607e-1937.96Non-specific lipid-transfer protein 6 OS=Arabidops... [more]
NLTPA_ARATH4.446e-1941.44Non-specific lipid-transfer protein 10 OS=Arabidop... [more]
NLTPB_ARATH1.294e-1846.23Non-specific lipid-transfer protein 11 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_F08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_F08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304953 ID=CB304953; Name=CB304953; organism=Citrus sinensis; type=EST; length=665bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTTGTTAAACTGAACACA
AGGCAAGATTTCATTTAATAACAGAATAGACACAAACTGACGATGACATG
AAAAGCAAAGACAATAAAACATAACATGAAACGAGGGCGCGAACGAGACT
CGCAGTACAAAGTGTAGAGAGAGACTCATAAATCGGACACAAAAATGTCC
TTATTATTATACATTTATTCTACTCCGTCAACTTAAACCTGAAAATCAAC
GGCCCAGATTCCTGTTCACCTGACCTTAGAGCAGTCAGTGGAGGTGCTGA
TCTTGTAAGGAATGCTGACTCCACAAGCTCCTGGAAGACCAGCAGCATTA
TTAAGGTTGAGGCTAGGGATTGATCTGGCGGCTTGCTTCAAGCAGTTGCA
TGCAGTTTGGCGGTCAGGTGTGGTTCTGGCGGCAGCGTTGAGAGACCTGA
CGCCGTTGCAGCATGGCATAGGTATAGGGCCGCCCGATCTCAAGAAACCG
ATGCATGGTGCCAATGAGCCACTCACCTGCCCACATGTTATGGCCTGAGC
ACTCAGGGGACCAGTCACCAACATGCACAGAACCAAAGTTGAAACAAGCT
TGAGGGCAGCCATTTGAGATTTCTCCTGAGATTTTCTTTTTCTTTTTTTT
TTTTTGCCTTGGTTA
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