CB304960

Overview
NameCB304960
Unique NameCB304960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig297 contig Csv1_Contig297:34..573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_ECOLC (Divalent-cation tolerance protein cutA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=cutA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = -1 
Query:  223 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 528
            S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   11 SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_ECOL6 (Divalent-cation tolerance protein cutA OS=Escherichia coli O6 GN=cutA PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = -1 
Query:  223 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 528
            S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   11 SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_ECOL5 (Divalent-cation tolerance protein cutA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=cutA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = -1 
Query:  223 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 528
            S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   11 SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_ECOHS (Divalent-cation tolerance protein cutA OS=Escherichia coli O9:H4 (strain HS) GN=cutA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = -1 
Query:  223 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 528
            S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   11 SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_ECODH (Divalent-cation tolerance protein cutA OS=Escherichia coli (strain K12 / DH10B) GN=cutA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = -1 
Query:  223 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 528
            S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   11 SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_ECOBW (Divalent-cation tolerance protein cutA OS=Escherichia coli (strain K12 / BW2952) GN=cutA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = -1 
Query:  223 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 528
            S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   11 SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_ECO8A (Divalent-cation tolerance protein cutA OS=Escherichia coli O8 (strain IAI1) GN=cutA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = -1 
Query:  223 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 528
            S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   11 SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_ECO7I (Divalent-cation tolerance protein cutA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=cutA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = -1 
Query:  223 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 528
            S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   11 SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_ECO5E (Divalent-cation tolerance protein cutA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=cutA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = -1 
Query:  223 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 528
            S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   11 SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
[Close]
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_ECO57 (Divalent-cation tolerance protein cutA OS=Escherichia coli O157:H7 GN=cutA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = -1 
Query:  223 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 528
            S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   11 SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
The following BLAST results are available for this feature:
BLAST of CB304960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CUTA_ECOLC1.226e-1739.22Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_ECOL61.226e-1739.22Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_ECOL51.226e-1739.22Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_ECOHS1.226e-1739.22Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_ECODH1.226e-1739.22Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_ECOBW1.226e-1739.22Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_ECO8A1.226e-1739.22Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_ECO7I1.226e-1739.22Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_ECO5E1.226e-1739.22Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_ECO571.226e-1739.22Divalent-cation tolerance protein cutA OS=Escheric... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_G03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_G03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304960 ID=CB304960; Name=CB304960; organism=Citrus sinensis; type=EST; length=540bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAACTAAGGGCATACAT
CATCTCACAAGTTTTGCCAACATAGAATTCATCACGATATGTTCCAGTTC
GATTATAAAATATACAAACTTTATTCTAGTAGTACCATCTGCACACTCAA
CCCAACAACAAAAGGAGCTTATCAGTTACAGCGTCCACACACTACATCAC
ACTACATCCGCGGGAGTCAGTCCCTTGTACTGCTTTTTAGCCACTCTAGG
TATGGCTGGCTGCCACCAGTGATGGGCAAGGCAATTACTTCTGGCACATC
ATATTCATGATTTGCCTTGACATGCTCTGTCAGAGTTTCCAAAAGGGATT
GCCTAGTCTTTATAATAAGAAGTTCTTCAGCATCTGTCTGGATCTCTCCC
TTCCACTCGTAAACAGATTCAATACCTGGCACTCGATTCACACATGCTGC
AAGTTTTGCTTTCACTATGCTTTCAGCCAGTTTCTTTCCTGCTTCTTTGT
TAGGAACGGTGACATAAACTACAATACTTGGTACAGTTTT
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