CB304960 | Citrus Genome Database

Overview


Name	CB304960
Unique Name	CB304960
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	540

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig297	contig	Csv1_Contig297:34..573.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_ECO55 (Divalent-cation tolerance protein cutA OS=Escherichia coli (strain 55989 / EAEC) GN=cutA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = -1

Query:  223 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 528
            S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   11 SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112

[Close]

BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_ECO45 (Divalent-cation tolerance protein cutA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=cutA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = -1

Query:  223 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 528
            S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   11 SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112

[Close]

BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_ECO24 (Divalent-cation tolerance protein cutA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=cutA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = -1

Query:  223 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 528
            S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   11 SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112

[Close]

BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_ECO81 (Divalent-cation tolerance protein cutA OS=Escherichia coli O81 (strain ED1a) GN=cutA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.091e-17
Identity = 39/102 (38.24%), Postives = 63/102 (61.76%), Query Frame = -1

Query:  223 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 528
            S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + + E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   11 SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQAMLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112

[Close]

BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_CITK8 (Divalent-cation tolerance protein cutA OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=cutA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.659e-17
Identity = 39/102 (38.24%), Postives = 63/102 (61.76%), Query Frame = -1

Query:  223 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 528
            ++VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115

[Close]

BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_SALTY (Divalent-cation tolerance protein cutA OS=Salmonella typhimurium GN=cutA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.038e-16
Identity = 38/102 (37.25%), Postives = 63/102 (61.76%), Query Frame = -1

Query:  223 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 528
            ++VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L + +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115

[Close]

BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_SALTI (Divalent-cation tolerance protein cutA OS=Salmonella typhi GN=cutA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.038e-16
Identity = 38/102 (37.25%), Postives = 63/102 (61.76%), Query Frame = -1

Query:  223 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 528
            ++VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L + +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115

[Close]

BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_SALSV (Divalent-cation tolerance protein cutA OS=Salmonella schwarzengrund (strain CVM19633) GN=cutA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.038e-16
Identity = 38/102 (37.25%), Postives = 63/102 (61.76%), Query Frame = -1

Query:  223 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 528
            ++VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L + +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115

[Close]

BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_SALPK (Divalent-cation tolerance protein cutA OS=Salmonella paratyphi A (strain AKU_12601) GN=cutA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.038e-16
Identity = 38/102 (37.25%), Postives = 63/102 (61.76%), Query Frame = -1

Query:  223 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 528
            ++VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L + +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115

[Close]

BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_SALPA (Divalent-cation tolerance protein cutA OS=Salmonella paratyphi A GN=cutA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.038e-16
Identity = 38/102 (37.25%), Postives = 63/102 (61.76%), Query Frame = -1

Query:  223 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 528
            ++VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L + +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115

The following BLAST results are available for this feature:

BLAST of CB304960 vs. ExPASy Swiss-Prot

BLAST of CB304960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59


Match Name	E-value	Identity	Description
CUTA_ECO55	1.226e-17	39.22	Divalent-cation tolerance protein cutA OS=Escheric...	[more]
CUTA_ECO45	1.226e-17	39.22	Divalent-cation tolerance protein cutA OS=Escheric...	[more]
CUTA_ECO24	1.226e-17	39.22	Divalent-cation tolerance protein cutA OS=Escheric...	[more]
CUTA_ECO81	2.091e-17	38.24	Divalent-cation tolerance protein cutA OS=Escheric...	[more]
CUTA_CITK8	4.659e-17	38.24	Divalent-cation tolerance protein cutA OS=Citrobac...	[more]
CUTA_SALTY	1.038e-16	37.25	Divalent-cation tolerance protein cutA OS=Salmonel...	[more]
CUTA_SALTI	1.038e-16	37.25	Divalent-cation tolerance protein cutA OS=Salmonel...	[more]
CUTA_SALSV	1.038e-16	37.25	Divalent-cation tolerance protein cutA OS=Salmonel...	[more]
CUTA_SALPK	1.038e-16	37.25	Divalent-cation tolerance protein cutA OS=Salmonel...	[more]
CUTA_SALPA	1.038e-16	37.25	Divalent-cation tolerance protein cutA OS=Salmonel...	[more]

Pages

Properties


Property Name	Value
Genbank description	FLAVEDO0003_IIIaR_G03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_G03 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304960 ID=CB304960; Name=CB304960; organism=Citrus sinensis; type=EST; length=540bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAACTAAGGGCATACAT
CATCTCACAAGTTTTGCCAACATAGAATTCATCACGATATGTTCCAGTTC
GATTATAAAATATACAAACTTTATTCTAGTAGTACCATCTGCACACTCAA
CCCAACAACAAAAGGAGCTTATCAGTTACAGCGTCCACACACTACATCAC
ACTACATCCGCGGGAGTCAGTCCCTTGTACTGCTTTTTAGCCACTCTAGG
TATGGCTGGCTGCCACCAGTGATGGGCAAGGCAATTACTTCTGGCACATC
ATATTCATGATTTGCCTTGACATGCTCTGTCAGAGTTTCCAAAAGGGATT
GCCTAGTCTTTATAATAAGAAGTTCTTCAGCATCTGTCTGGATCTCTCCC
TTCCACTCGTAAACAGATTCAATACCTGGCACTCGATTCACACATGCTGC
AAGTTTTGCTTTCACTATGCTTTCAGCCAGTTTCTTTCCTGCTTCTTTGT
TAGGAACGGTGACATAAACTACAATACTTGGTACAGTTTT