CB304960

Overview
NameCB304960
Unique NameCB304960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig297 contig Csv1_Contig297:34..573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_YERPN (Divalent-cation tolerance protein cutA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=cutA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.727e-16
Identity = 36/100 (36.00%), Postives = 61/100 (61.00%), Query Frame = -1
Query:  229 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSS 528
            +IVV  T P++ + + LA  ++  KLAACV  +PG  S+Y W+G+++ + E  L+ K+     + L  ++K +H Y  PE++ LP+  G + YL WL +S
Sbjct:   18 AIVVLCTAPDEASAQNLAAQVLGEKLAACVTLLPGATSLYYWEGKLEQEYEVQLLFKSNTDHQQALLTYIKQHHPYQTPELLVLPVRDGDKDYLSWLNAS 117          
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_YERPG (Divalent-cation tolerance protein cutA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=cutA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.727e-16
Identity = 36/100 (36.00%), Postives = 61/100 (61.00%), Query Frame = -1
Query:  229 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSS 528
            +IVV  T P++ + + LA  ++  KLAACV  +PG  S+Y W+G+++ + E  L+ K+     + L  ++K +H Y  PE++ LP+  G + YL WL +S
Sbjct:   18 AIVVLCTAPDEASAQNLAAQVLGEKLAACVTLLPGATSLYYWEGKLEQEYEVQLLFKSNTDHQQALLTYIKQHHPYQTPELLVLPVRDGDKDYLSWLNAS 117          
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_YERPE (Divalent-cation tolerance protein cutA OS=Yersinia pestis GN=cutA PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.727e-16
Identity = 36/100 (36.00%), Postives = 61/100 (61.00%), Query Frame = -1
Query:  229 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSS 528
            +IVV  T P++ + + LA  ++  KLAACV  +PG  S+Y W+G+++ + E  L+ K+     + L  ++K +H Y  PE++ LP+  G + YL WL +S
Sbjct:   18 AIVVLCTAPDEASAQNLAAQVLGEKLAACVTLLPGATSLYYWEGKLEQEYEVQLLFKSNTDHQQALLTYIKQHHPYQTPELLVLPVRDGDKDYLSWLNAS 117          
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_YERPB (Divalent-cation tolerance protein cutA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=cutA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.727e-16
Identity = 36/100 (36.00%), Postives = 61/100 (61.00%), Query Frame = -1
Query:  229 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSS 528
            +IVV  T P++ + + LA  ++  KLAACV  +PG  S+Y W+G+++ + E  L+ K+     + L  ++K +H Y  PE++ LP+  G + YL WL +S
Sbjct:   18 AIVVLCTAPDEASAQNLAAQVLGEKLAACVTLLPGATSLYYWEGKLEQEYEVQLLFKSNTDHQQALLTYIKQHHPYQTPELLVLPVRDGDKDYLSWLNAS 117          
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_YERPA (Divalent-cation tolerance protein cutA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=cutA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.727e-16
Identity = 36/100 (36.00%), Postives = 61/100 (61.00%), Query Frame = -1
Query:  229 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSS 528
            +IVV  T P++ + + LA  ++  KLAACV  +PG  S+Y W+G+++ + E  L+ K+     + L  ++K +H Y  PE++ LP+  G + YL WL +S
Sbjct:   18 AIVVLCTAPDEASAQNLAAQVLGEKLAACVTLLPGATSLYYWEGKLEQEYEVQLLFKSNTDHQQALLTYIKQHHPYQTPELLVLPVRDGDKDYLSWLNAS 117          
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_YERP3 (Divalent-cation tolerance protein cutA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=cutA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.727e-16
Identity = 36/100 (36.00%), Postives = 61/100 (61.00%), Query Frame = -1
Query:  229 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSS 528
            +IVV  T P++ + + LA  ++  KLAACV  +PG  S+Y W+G+++ + E  L+ K+     + L  ++K +H Y  PE++ LP+  G + YL WL +S
Sbjct:   18 AIVVLCTAPDEASAQNLAAQVLGEKLAACVTLLPGATSLYYWEGKLEQEYEVQLLFKSNTDHQQALLTYIKQHHPYQTPELLVLPVRDGDKDYLSWLNAS 117          
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_PYRHO (Divalent-cation tolerance protein cutA OS=Pyrococcus horikoshii GN=cutA PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.714e-15
Identity = 38/101 (37.62%), Postives = 63/101 (62.38%), Query Frame = -1
Query:  223 IVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 525
            I+VY T P+ E+ +K+ ++++K +L AC N +    + Y W+G+I+ D E   I+KTR+ L E L E +K  H YDVP +I + +   ++ YL+WL   T+
Sbjct:    2 IIVYTTFPDWESAEKVVKTLLKERLIACAN-LREHRAFYWWEGKIEEDKEVGAILKTREDLWEELKERIKELHPYDVPAIIRIDVDDVNEDYLKWLIEETK 101          
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_ARCFU (Divalent-cation tolerance protein cutA OS=Archaeoglobus fulgidus GN=cutA PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.826e-14
Identity = 35/94 (37.23%), Postives = 60/94 (63.83%), Query Frame = -1
Query:  238 VYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWL 519
            +Y+T P+ E  +++A+ +++ KLAACVN  P I+S + W+G+I+   E  +I+KTR      + + VKA H Y  P + A+PI  G + +L+W+
Sbjct:    5 IYITAPSLEEAERIAKRLLEKKLAACVNIFP-IKSFFWWEGKIEAATEFAMIVKTRSEKFAEVRDEVKAMHSYTTPCICAIPIERGLKEFLDWI 97          
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_ENCCU (Probable divalent-cation tolerance protein cutA homolog OS=Encephalitozoon cuniculi GN=ECU04_1360 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.005e-11
Identity = 37/100 (37.00%), Postives = 57/100 (57.00%), Query Frame = -1
Query:  220 VYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTRD 519
            V VT P +E+ ++ +  +V+ +LAAC  ++  I S+Y WK  I  + E  LI KT  SL   + E V  +H Y+VPE+  + +   S+ YLEW+ S   D
Sbjct:    7 VSVTYPTRESAEESSCELVRRRLAACC-QISEITSIYFWKEAIVKETEYKLIAKTFSSLFAGIQEFVAGSHPYEVPEITGMEMHLASRQYLEWMNSCVDD 105          
The following BLAST results are available for this feature:
BLAST of CB304960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CUTA_YERPN6.727e-1636.00Divalent-cation tolerance protein cutA OS=Yersinia... [more]
CUTA_YERPG6.727e-1636.00Divalent-cation tolerance protein cutA OS=Yersinia... [more]
CUTA_YERPE6.727e-1636.00Divalent-cation tolerance protein cutA OS=Yersinia... [more]
CUTA_YERPB6.727e-1636.00Divalent-cation tolerance protein cutA OS=Yersinia... [more]
CUTA_YERPA6.727e-1636.00Divalent-cation tolerance protein cutA OS=Yersinia... [more]
CUTA_YERP36.727e-1636.00Divalent-cation tolerance protein cutA OS=Yersinia... [more]
CUTA_PYRHO9.714e-1537.62Divalent-cation tolerance protein cutA OS=Pyrococc... [more]
CUTA_ARCFU2.826e-1437.23Divalent-cation tolerance protein cutA OS=Archaeog... [more]
CUTA_ENCCU1.005e-1137.00Probable divalent-cation tolerance protein cutA ho... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_G03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_G03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304960 ID=CB304960; Name=CB304960; organism=Citrus sinensis; type=EST; length=540bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAACTAAGGGCATACAT
CATCTCACAAGTTTTGCCAACATAGAATTCATCACGATATGTTCCAGTTC
GATTATAAAATATACAAACTTTATTCTAGTAGTACCATCTGCACACTCAA
CCCAACAACAAAAGGAGCTTATCAGTTACAGCGTCCACACACTACATCAC
ACTACATCCGCGGGAGTCAGTCCCTTGTACTGCTTTTTAGCCACTCTAGG
TATGGCTGGCTGCCACCAGTGATGGGCAAGGCAATTACTTCTGGCACATC
ATATTCATGATTTGCCTTGACATGCTCTGTCAGAGTTTCCAAAAGGGATT
GCCTAGTCTTTATAATAAGAAGTTCTTCAGCATCTGTCTGGATCTCTCCC
TTCCACTCGTAAACAGATTCAATACCTGGCACTCGATTCACACATGCTGC
AAGTTTTGCTTTCACTATGCTTTCAGCCAGTTTCTTTCCTGCTTCTTTGT
TAGGAACGGTGACATAAACTACAATACTTGGTACAGTTTT
back to top