CB304961

Overview
NameCB304961
Unique NameCB304961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2009 contig Csv1_Contig2009:334..872. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304961 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.529e-12
Identity = 37/59 (62.71%), Postives = 44/59 (74.58%), Query Frame = -3 
Query:  310 KYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKIA 486
            KYVRMERR+GKFMRKF LPENA+++ ISAVC DGVL VTV           KTI+V++A
Sbjct:   97 KYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVTVQKLPPPEPKKPKTIQVQVA 155
[Close]
BLAST of CB304961 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.207e-11
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = -3 
Query:  310 KYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKIA 486
            K+VRMERR+GKFMRKF LP+NA++E ISA C DGVL VT+           KTI+V++A
Sbjct:   98 KFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVTIPKLPPPEPKKPKTIQVQVA 156
The following BLAST results are available for this feature:
BLAST of CB304961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
HS176_ARATH1.529e-1262.7117.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HS177_ARATH2.207e-1157.6317.7 kDa class II heat shock protein OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_G05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_G05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304961 ID=CB304961; Name=CB304961; organism=Citrus sinensis; type=EST; length=539bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATAAAAGCTGGATTTTT
CATTAATTATAACAACTAGATGTCTACCAGTAGACAGCCGTCAGCTTCCC
CTCCGGAATGCTAAAGACCGAACCGCAAACCAGTGAACAGAGAGAATTTT
CGAAAAAAAGGGAAGAAAAACAAAAAAAGAAAAAGGAAGAGGAGGTTACA
GAGGCATAGTACCGTCACACCCACAAGCAAAATTATTCATAACAACAACC
GGCAAATAGAAAAGACATCAGCACCCACAATCCAGCATATTCTCTCTCTT
TAAAGTTCAAGCAATCTTAACCTCAATGGTCTTGGGCTTCTTGGGCTCCG
GCGGTGGCAGCTTATCGACGGTCACAGTCAACACTCCGTCCTGACACACA
GCCGAAATGGCTTCAACGTTAGCATTCTCAGGCAGCACAAATTTCCTCAT
AAACTTGCCGACCCTCCTCTCCATTCTCACATACTTGGCCCCCTCTTTCT
CCTCCTCCCGCTTCCTCTCTCCGCTTATGAGCAGCACAT
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