CB304972

Overview
NameCB304972
Unique NameCB304972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length544
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: LET12_SOLLC (Homeobox protein knotted-1-like LET12 OS=Solanum lycopersicum GN=LET12 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.322e-22
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = -2
Query:  397 VLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNWHSN 543
            VLK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQI NWFINQRKRNWHSN
Sbjct:  363 VLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 411          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNOSB_ORYSJ (Homeobox protein knotted-1-like 11 OS=Oryza sativa subsp. japonica GN=HOS59 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 3.162e-21
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = -2
Query:  397 LKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNWHSN 540
            LK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQI NWFINQRKRNWHSN
Sbjct:  251 LKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 298          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNOSD_ORYSJ (Homeobox protein knotted-1-like 13 OS=Oryza sativa subsp. japonica GN=OSH45 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.130e-21
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = -2
Query:  382 LKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNWHSNSQXVT 540
            LK WWQ H+KWPYPTE+DKA+LV+ETGLQLKQI NWFINQRKRNWHSN    T
Sbjct:  307 LKAWWQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSST 359          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNAT5_ARATH (Homeobox protein knotted-1-like 5 OS=Arabidopsis thaliana GN=KNAT5 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.130e-21
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = -2
Query:  394 VLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNWHSNS 543
            VLK WW+ HSKWPYPTE+DKAKLV+ETGLQLKQI NWFINQRKRNW+SNS
Sbjct:  317 VLKEWWRTHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWNSNS 366          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNOX2_MAIZE (Homeobox protein knotted-1-like 2 (Fragment) OS=Zea mays GN=KNOX2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.045e-21
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = -2
Query:  397 LKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNWHSN 540
            LK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQI NWFINQRKRNWH+N
Sbjct:   41 LKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHNN 88          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNAT2_ARATH (Homeobox protein knotted-1-like 2 OS=Arabidopsis thaliana GN=KNAT2 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 4.890e-14
Identity = 32/45 (71.11%), Postives = 34/45 (75.56%), Query Frame = -2
Query:  406 LKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 540
            L  WW  H+KWPYPTE DK  L EETGL  KQI NWFINQRKR+W
Sbjct:  245 LLDWWNVHNKWPYPTEGDKISLAEETGLDQKQINNWFINQRKRHW 289          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KN1_MAIZE (Homeotic protein knotted-1 OS=Zea mays GN=KN-1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.341e-14
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = -2
Query:  391 LKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNWHSNSQ 540
            L +WW QH KWPYP+E  K  L E TGL LKQI NWFINQRKR+W  + +
Sbjct:  279 LLSWWDQHYKWPYPSETQKVALAESTGLDLKQINNWFINQRKRHWKPSEE 328          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNOX3_HORVU (Homeobox protein KNOX3 OS=Hordeum vulgare GN=KNOX3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.858e-13
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = -2
Query:  406 LKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 540
            L +WW+ H KWPYP+E  K  L E TGL LKQI NWFINQRKR+W
Sbjct:  283 LLSWWEMHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHW 327          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNOS6_ORYSJ (Homeobox protein knotted-1-like 6 OS=Oryza sativa subsp. japonica GN=OSH1 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.170e-13
Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = -2
Query:  391 LKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNWHSNSQ 540
            L  WW+ H KWPYP+E  K  L E TGL LKQI NWFINQRKR+W  + +
Sbjct:  279 LLNWWELHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSDE 328          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNAT1_ARATH (Homeobox protein knotted-1-like 1 OS=Arabidopsis thaliana GN=KNAT1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.170e-13
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = -2
Query:  406 LKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 540
            L TWW+ H KWPYP+E +K  L E TGL  KQI NWFINQRKR+W
Sbjct:  316 LLTWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHW 360          
The following BLAST results are available for this feature:
BLAST of CB304972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
LET12_SOLLC8.322e-2287.76Homeobox protein knotted-1-like LET12 OS=Solanum l... [more]
KNOSB_ORYSJ3.162e-2187.50Homeobox protein knotted-1-like 11 OS=Oryza sativa... [more]
KNOSD_ORYSJ4.130e-2179.25Homeobox protein knotted-1-like 13 OS=Oryza sativa... [more]
KNAT5_ARATH4.130e-2186.00Homeobox protein knotted-1-like 5 OS=Arabidopsis t... [more]
KNOX2_MAIZE7.045e-2185.42Homeobox protein knotted-1-like 2 (Fragment) OS=Ze... [more]
KNAT2_ARATH4.890e-1471.11Homeobox protein knotted-1-like 2 OS=Arabidopsis t... [more]
KN1_MAIZE8.341e-1462.00Homeotic protein knotted-1 OS=Zea mays GN=KN-1 PE=... [more]
KNOX3_HORVU1.858e-1366.67Homeobox protein KNOX3 OS=Hordeum vulgare GN=KNOX3... [more]
KNOS6_ORYSJ3.170e-1360.00Homeobox protein knotted-1-like 6 OS=Oryza sativa ... [more]
KNAT1_ARATH3.170e-1366.67Homeobox protein knotted-1-like 1 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_A03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_A03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304972 ID=CB304972; Name=CB304972; organism=Citrus sinensis; type=EST; length=544bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAATTAGAACGAAGCAACT
TAAAAACCTCGAGTTTCTTCAACCTGGTATAAGCTAGAAATTACGTGGAA
ACGTAATGAATCTACAAACTTATAAGAAAGCTATGTAAATCCCATCTCAT
CTATTACATTCTATGGAAGCTACCAAGGCTTTCCAAGTTTCTTCAGAGCC
TTCACAAAAGTTAGCACCAAAACGATATGTACCCCAGAGCCACAAAAGCA
AGCTAGCTAGATAGAGCTATATGTGTGTTGACACAAAAGTGAGTAACTCC
TTCATTGCTCATACATCATTAATTCATCGTCAAGATATATTTGGAGATAT
CTCTCTACCTTTTGCGCTTTGACTTTAAAGACGTCACNNNCTGGGAGTTG
CTGTGCCAGTTGCGCTTCCTCTGGTTGATGAACCAGTTGATGATTTGCTT
TAGTTGCAAGCCTGTCTCCTCCACTAGCTTTGCCTTGTCATCTTCAGTTG
GGTATGGCCATTTGGAGTGTTGCTGCCACCAAGTCTTGAGCACT
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