CB304972

Overview
NameCB304972
Unique NameCB304972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length544
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNOS4_ORYSJ (Homeobox protein knotted-1-like 4 OS=Oryza sativa subsp. japonica GN=OSH10 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.573e-12
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = -2
Query:  406 WWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 531
            WWQ H +WPYP+E +KA L E TGL  KQI NWFINQRKR+W
Sbjct:  240 WWQLHYRWPYPSELEKAALAESTGLDAKQINNWFINQRKRHW 281          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNAT6_ARATH (Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana GN=KNAT6 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.573e-12
Identity = 30/45 (66.67%), Postives = 32/45 (71.11%), Query Frame = -2
Query:  406 LKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 540
            L  WW  H KWPYPTE DK  L + TGL  KQI NWFINQRKR+W
Sbjct:  261 LLDWWNLHYKWPYPTEGDKIALADATGLDQKQINNWFINQRKRHW 305          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: STM_BRAOL (Homeobox protein SHOOT MERISTEMLESS OS=Brassica oleracea GN=STM PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.683e-12
Identity = 29/45 (64.44%), Postives = 32/45 (71.11%), Query Frame = -2
Query:  406 LKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 540
            L  WW +H KWPYP+E  K  L E TGL  KQI NWFINQRKR+W
Sbjct:  300 LLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHW 344          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: STM_ARATH (Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis thaliana GN=STM PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.683e-12
Identity = 29/45 (64.44%), Postives = 32/45 (71.11%), Query Frame = -2
Query:  406 LKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 540
            L  WW +H KWPYP+E  K  L E TGL  KQI NWFINQRKR+W
Sbjct:  299 LLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHW 343          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNOS5_ORYSJ (Putative homeobox protein knotted-1-like 5 OS=Oryza sativa subsp. japonica GN=Os03g0673500 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.683e-12
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = -2
Query:  406 LKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 540
            L  WW  H +WPYP+E +KA L E TGL  KQ+ NWFINQRKR+W
Sbjct:  244 LLQWWHLHYRWPYPSEAEKAALAESTGLDKKQVTNWFINQRKRHW 288          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: HSBH1_SOYBN (Homeobox protein SBH1 OS=Glycine max GN=H1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.683e-12
Identity = 29/45 (64.44%), Postives = 32/45 (71.11%), Query Frame = -2
Query:  406 LKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 540
            L  WW +H KWPYP+E  K  L E TGL  KQI NWFINQRKR+W
Sbjct:  298 LLEWWNRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHW 342          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: RSH1_MAIZE (Homeobox protein rough sheath 1 OS=Zea mays GN=RS1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.504e-12
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = -2
Query:  406 WWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 531
            WW+ H KWPYP+E +K  L E TGL  KQI NWFINQRKR+W
Sbjct:  272 WWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHW 313          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNOX3_MAIZE (Homeobox protein knotted-1-like 3 (Fragment) OS=Zea mays GN=KNOX3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.504e-12
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = -2
Query:  406 LKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 540
            L +WW+ H +WPYP+E +K  L E TGL+ KQI NWFINQRKR+W
Sbjct:   41 LLSWWELHYRWPYPSEMEKIALAESTGLEQKQINNWFINQRKRHW 85          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNOSC_ORYSJ (Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. japonica GN=OSH15 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.504e-12
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = -2
Query:  406 WWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 531
            WW+ H KWPYP+E +K  L E TGL  KQI NWFINQRKR+W
Sbjct:  276 WWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHW 317          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNOSC_ORYSI (Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. indica GN=OSH15 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.504e-12
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = -2
Query:  406 WWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 531
            WW+ H KWPYP+E +K  L E TGL  KQI NWFINQRKR+W
Sbjct:  276 WWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHW 317          
The following BLAST results are available for this feature:
BLAST of CB304972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
KNOS4_ORYSJ1.573e-1269.05Homeobox protein knotted-1-like 4 OS=Oryza sativa ... [more]
KNAT6_ARATH1.573e-1266.67Homeobox protein knotted-1-like 6 OS=Arabidopsis t... [more]
STM_BRAOL2.683e-1264.44Homeobox protein SHOOT MERISTEMLESS OS=Brassica ol... [more]
STM_ARATH2.683e-1264.44Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis... [more]
KNOS5_ORYSJ2.683e-1262.22Putative homeobox protein knotted-1-like 5 OS=Oryz... [more]
HSBH1_SOYBN2.683e-1264.44Homeobox protein SBH1 OS=Glycine max GN=H1 PE=2 SV... [more]
RSH1_MAIZE3.504e-1266.67Homeobox protein rough sheath 1 OS=Zea mays GN=RS1... [more]
KNOX3_MAIZE3.504e-1262.22Homeobox protein knotted-1-like 3 (Fragment) OS=Ze... [more]
KNOSC_ORYSJ3.504e-1266.67Homeobox protein knotted-1-like 12 OS=Oryza sativa... [more]
KNOSC_ORYSI3.504e-1266.67Homeobox protein knotted-1-like 12 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_A03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_A03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304972 ID=CB304972; Name=CB304972; organism=Citrus sinensis; type=EST; length=544bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAATTAGAACGAAGCAACT
TAAAAACCTCGAGTTTCTTCAACCTGGTATAAGCTAGAAATTACGTGGAA
ACGTAATGAATCTACAAACTTATAAGAAAGCTATGTAAATCCCATCTCAT
CTATTACATTCTATGGAAGCTACCAAGGCTTTCCAAGTTTCTTCAGAGCC
TTCACAAAAGTTAGCACCAAAACGATATGTACCCCAGAGCCACAAAAGCA
AGCTAGCTAGATAGAGCTATATGTGTGTTGACACAAAAGTGAGTAACTCC
TTCATTGCTCATACATCATTAATTCATCGTCAAGATATATTTGGAGATAT
CTCTCTACCTTTTGCGCTTTGACTTTAAAGACGTCACNNNCTGGGAGTTG
CTGTGCCAGTTGCGCTTCCTCTGGTTGATGAACCAGTTGATGATTTGCTT
TAGTTGCAAGCCTGTCTCCTCCACTAGCTTTGCCTTGTCATCTTCAGTTG
GGTATGGCCATTTGGAGTGTTGCTGCCACCAAGTCTTGAGCACT
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