CB304972

Overview
NameCB304972
Unique NameCB304972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length544
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12449 contig Csv1_Contig12449:963..1506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: LET6_SOLLC (Homeobox protein knotted-1-like LET6 OS=Solanum lycopersicum GN=LET6 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.577e-12
Identity = 29/45 (64.44%), Postives = 32/45 (71.11%), Query Frame = -2 
Query:  406 LKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 540
            L  WW +H KWPYP+E  K  L E TGL  KQI NWFINQRKR+W
Sbjct:  274 LVDWWLRHIKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHW 318
[Close]
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNOX4_MAIZE (Homeobox protein knotted-1-like 4 (Fragment) OS=Zea mays GN=KNOX4 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.577e-12
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = -2 
Query:  406 WWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 531
            WW+ H KWPYP+E +K  L E TGL  KQI NWFINQRKR+W
Sbjct:   41 WWELHYKWPYPSETEKIALAEATGLDQKQINNWFINQRKRHW 82
[Close]
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNOX8_MAIZE (Homeobox protein knotted-1-like 8 (Fragment) OS=Zea mays GN=KNOX8 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.977e-12
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = -2 
Query:  406 WWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 531
            WW+ H KWPYP+E +K  L E TGL  KQI NWFINQRKR+W
Sbjct:   41 WWELHYKWPYPSETEKMALAETTGLDPKQINNWFINQRKRHW 82
[Close]
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNOS8_ORYSJ (Homeobox protein knotted-1-like 8 OS=Oryza sativa subsp. japonica GN=OSH43 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.739e-11
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = -2 
Query:  406 WWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 531
            WW+ H KWPYP+E +K  L + TGL  KQI NWFINQRKR+W
Sbjct:  247 WWELHYKWPYPSEMEKMTLAQTTGLDQKQINNWFINQRKRHW 288
The following BLAST results are available for this feature:
BLAST of CB304972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
LET6_SOLLC4.577e-1264.44Homeobox protein knotted-1-like LET6 OS=Solanum ly... [more]
KNOX4_MAIZE4.577e-1266.67Homeobox protein knotted-1-like 4 (Fragment) OS=Ze... [more]
KNOX8_MAIZE5.977e-1266.67Homeobox protein knotted-1-like 8 (Fragment) OS=Ze... [more]
KNOS8_ORYSJ1.739e-1164.29Homeobox protein knotted-1-like 8 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_A03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_A03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304972 ID=CB304972; Name=CB304972; organism=Citrus sinensis; type=EST; length=544bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAATTAGAACGAAGCAACT
TAAAAACCTCGAGTTTCTTCAACCTGGTATAAGCTAGAAATTACGTGGAA
ACGTAATGAATCTACAAACTTATAAGAAAGCTATGTAAATCCCATCTCAT
CTATTACATTCTATGGAAGCTACCAAGGCTTTCCAAGTTTCTTCAGAGCC
TTCACAAAAGTTAGCACCAAAACGATATGTACCCCAGAGCCACAAAAGCA
AGCTAGCTAGATAGAGCTATATGTGTGTTGACACAAAAGTGAGTAACTCC
TTCATTGCTCATACATCATTAATTCATCGTCAAGATATATTTGGAGATAT
CTCTCTACCTTTTGCGCTTTGACTTTAAAGACGTCACNNNCTGGGAGTTG
CTGTGCCAGTTGCGCTTCCTCTGGTTGATGAACCAGTTGATGATTTGCTT
TAGTTGCAAGCCTGTCTCCTCCACTAGCTTTGCCTTGTCATCTTCAGTTG
GGTATGGCCATTTGGAGTGTTGCTGCCACCAAGTCTTGAGCACT
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