CB304976 | Citrus Genome Database

Overview


Name	CB304976
Unique Name	CB304976
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	579

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1525	contig	Csv1_Contig1525:259..837.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_MOUSE (60S ribosomal protein L11 OS=Mus musculus GN=Rpl11 PE=1 SV=4)

HSP 1 Score: 144.436 bits (363), Expect = 3.701e-34
Identity = 71/114 (62.28%), Postives = 85/114 (74.56%), Query Frame = -2

Query:  237 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 578
            IRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFS TG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G +HR++KE+AM+WFQ KY+G+IL
Sbjct:   62 IRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175

[Close]

BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_HUMAN (60S ribosomal protein L11 OS=Homo sapiens GN=RPL11 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 3.701e-34
Identity = 71/114 (62.28%), Postives = 85/114 (74.56%), Query Frame = -2

Query:  237 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 578
            IRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFS TG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G +HR++KE+AM+WFQ KY+G+IL
Sbjct:   62 IRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175

[Close]

BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_CHILA (60S ribosomal protein L11 OS=Chinchilla lanigera GN=RPL11 PE=2 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 3.701e-34
Identity = 71/114 (62.28%), Postives = 85/114 (74.56%), Query Frame = -2

Query:  237 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 578
            IRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFS TG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G +HR++KE+AM+WFQ KY+G+IL
Sbjct:   62 IRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175

[Close]

BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_BOVIN (60S ribosomal protein L11 OS=Bos taurus GN=RPL11 PE=2 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 3.701e-34
Identity = 71/114 (62.28%), Postives = 85/114 (74.56%), Query Frame = -2

Query:  237 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 578
            IRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFS TG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G +HR++KE+AM+WFQ KY+G+IL
Sbjct:   62 IRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175

[Close]

BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_CAEEL (60S ribosomal protein L11 OS=Caenorhabditis elegans GN=rpl-11.1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.244e-34
Identity = 71/114 (62.28%), Postives = 81/114 (71.05%), Query Frame = -2

Query:  237 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 578
            IRRNEKIA + TVRG KA ++LE GLKVKEYEL + NFS TG FGFG+QEHIDLGIKYDP  GIYGMDF+VVL                 G  HRV KE+ +KWFQ KY+G+IL
Sbjct:   69 IRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 182

[Close]

BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_PIG (60S ribosomal protein L11 OS=Sus scrofa GN=RPL11 PE=2 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 1.406e-33
Identity = 70/114 (61.40%), Postives = 85/114 (74.56%), Query Frame = -2

Query:  237 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 578
            IRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFS TG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G +HR++KE+AM+WFQ K++G+IL
Sbjct:   62 IRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKHDGIIL 175

[Close]

BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_DICDI (60S ribosomal protein L11 OS=Dictyostelium discoideum GN=rpl11 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.837e-33
Identity = 68/114 (59.65%), Postives = 83/114 (72.81%), Query Frame = -2

Query:  237 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 578
            IRRNE+IA +VTVRG+KA ++LE GLKV+E+EL  RNFS  G FGFGIQEHIDLGIKYDPS GIYGMDFFVVL                 G QH++ KEDA+ WF+  Y+G+++
Sbjct:   85 IRRNEQIAAHVTVRGEKAAEILEKGLKVREFELRARNFSTQGSFGFGIQEHIDLGIKYDPSIGIYGMDFFVVLSRPGFRVAHKKRAGAKVGFQHKIGKEDAVNWFKTTYDGIVI 198

[Close]

BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_SPOFR (60S ribosomal protein L11 OS=Spodoptera frugiperda GN=RpL11 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.399e-33
Identity = 75/119 (63.03%), Postives = 84/119 (70.59%), Query Frame = -2

Query:  225 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRV-TKEDAMKWFQVKYEGVILNKSQ 578
            IRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                  I   V TKEDAMKWFQ KY+G+ILN  +
Sbjct:   77 IRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGPTRIQCTTQKTQDWQGWIPPIVLTKEDAMKWFQQKYDGIILNSKK 195

[Close]

BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_ICTPU (60S ribosomal protein L11 OS=Ictalurus punctatus GN=rpl11 PE=2 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 4.091e-33
Identity = 70/114 (61.40%), Postives = 83/114 (72.81%), Query Frame = -2

Query:  237 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 578
            IRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFS +G FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G +HR+ K +AM+WFQ KY+GVIL
Sbjct:   62 IRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRKRGRIGFKHRIRKREAMRWFQQKYDGVIL 175

[Close]

BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_LEICH (60S ribosomal protein L11 OS=Leishmania chagasi GN=RPL11 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.652e-32
Identity = 71/113 (62.83%), Postives = 80/113 (70.80%), Query Frame = -2

Query:  240 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVI 578
            IRRNEKIA + TVRG KA +LLE GLKVKE+EL   NFS TG FGFGI EHIDLGIKYDPSTGIYGMDF+VVL                 G  H VTKE+AMKWF+  ++G+I
Sbjct:   61 IRRNEKIAVHCTVRGKKAEELLEKGLKVKEFELKSYNFSDTGSFGFGIDEHIDLGIKYDPSTGIYGMDFYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173

The following BLAST results are available for this feature:

BLAST of CB304976 vs. ExPASy Swiss-Prot

BLAST of CB304976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51


Match Name	E-value	Identity	Description
RL11_MOUSE	3.701e-34	62.28	60S ribosomal protein L11 OS=Mus musculus GN=Rpl11...	[more]
RL11_HUMAN	3.701e-34	62.28	60S ribosomal protein L11 OS=Homo sapiens GN=RPL11...	[more]
RL11_CHILA	3.701e-34	62.28	60S ribosomal protein L11 OS=Chinchilla lanigera G...	[more]
RL11_BOVIN	3.701e-34	62.28	60S ribosomal protein L11 OS=Bos taurus GN=RPL11 P...	[more]
RL11_CAEEL	8.244e-34	62.28	60S ribosomal protein L11 OS=Caenorhabditis elegan...	[more]
RL11_PIG	1.406e-33	61.40	60S ribosomal protein L11 OS=Sus scrofa GN=RPL11 P...	[more]
RL11_DICDI	1.837e-33	59.65	60S ribosomal protein L11 OS=Dictyostelium discoid...	[more]
RL11_SPOFR	2.399e-33	63.03	60S ribosomal protein L11 OS=Spodoptera frugiperda...	[more]
RL11_ICTPU	4.091e-33	61.40	60S ribosomal protein L11 OS=Ictalurus punctatus G...	[more]
RL11_LEICH	2.652e-32	62.83	60S ribosomal protein L11 OS=Leishmania chagasi GN...	[more]

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Properties


Property Name	Value
Genbank description	FLAVEDO0003_IIaR_A07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_A07 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304976 ID=CB304976; Name=CB304976; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTATCTGCGATTTTTAGTG
CAGCTAAGCCATAATCTTGATAATAAAATTTAAATAGACAAATAACAAAA
TATCTTGAACTACCAAAAGCATCTAACTCAGGTTTGCAAAACGCCAAGTA
ATAGCCAGTGTCTACAAACATCAACACTATAAATGCAAAATCGTCATCAC
ACAAAGGGCTTAAGCACCAATATTCTGGGACTTGTTGAGGATCACACCTT
CGTATTTGACCTGGAACCATTTCATTGCATCTTCCTTCGTGACACGGTGC
TGAATCCCAACACGAGACTTGCACCTACGGCGTCGACCTACACGATAACC
CGGGCGCTCCAGAACCACAAAGAAATCCATACCATAAATTCCAGTGGAAG
GATCATACTTGATTCCAAGATCAATATGCTCTTGAATACCAAAGCCAAAA
CAGCCAGTGCCACTGAAATTCCGACGCAGAAGCTCATATTCCTTCACCTT
CAATCCACTCTCCAAAAGCTGCATTGCCTTGTCACCTCTAACAGTCACAT
AGCATGCAATCTTCTCATTACGTCTGATC